Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq7 237 2e-57 >seq7 Length=2761852 Score = 237 bits (262), Expect = 2e-57 Identities = 567/843 (67%), Gaps = 27/843 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 |||||| || |||||||||||||| ||| ||| || ||||| || | || ||||| Sbjct 1551645 CTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATAAAGTCAAAGGGGTT 1551586 Query 159709 CTTC-ACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 | || || || |||| |||||||| |||||| | ||| || ||||||| Sbjct 1551585 GGACGACTTG-TACACCTTCTCGTTGCCGAGAGCGACCAGCAGGCGGTCGGCAACAAATT 1551527 Query 159768 CGATGTAGCTACA-CATCTGCTCACAGTTGATCCCCAGCAG--CCTAACGGGGAGCGCTT 159824 | ||||| || | |||| | | |||| || |||||||| | || || || || | Sbjct 1551526 CAATGTA-CTGCTTCATCAGGTTGGAGTTCATGCCCAGCAGAGCGCAA--GGCAGGGCCT 1551470 Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCG 159883 | | ||| ||||||| ||| || ||| || ||||| | || | ||| ||| | | Sbjct 1551469 CGGTCAGGAACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCGCGGATCACCTCCT 1551410 Query 159884 TAC---CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGC 159940 | | | ||| | | | |||| | ||| ||||| |||||||| |||| Sbjct 1551409 TGCTGGCGCGGTTCTTC----AGGTGGGAGTG---CAGCAGGCAGGCAAAGTCCGTGTGC 1551357 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 || |||||||| || ||||||| ||||||||| | | | ||||| ||||||| || ||| Sbjct 1551356 AGACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCCCGC 1551297 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 |||||||| || |||| ||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 1551296 TTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCA 1551237 Query 160061 AACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 || || || || | || |||| |||| ||| |||| ||| |||| | | ||||| Sbjct 1551236 AAGGCAACCAGGCGCTGGGCAAAGGAGGAGTTCTTGTCCTGGATCCATCGGATAGCCCAG 1551177 Query 160121 TCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACA---ATCTGTCCTGC 160177 ||||||||||| |||||| || ||| ||| | ||||| || | | ||| ||| Sbjct 1551176 TCAGCCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAGAGGTAGCTGCGCTGG 1551117 Query 160178 TCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTT 160237 | | |||||||| ||| | || ||| ||||||| | || | ||| | || Sbjct 1551116 CTGTGC---TCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGTATGTTC 1551060 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTG 160297 || || ||||| ||| |||||| | ||||| || ||| ||||| || Sbjct 1551059 TCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCCGCTG 1551000 Query 160298 AACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACG 160357 || | | |||| || | || || | ||||| | ||| || ||||| |||| | | Sbjct 1550999 AAGCGCTCGACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAAGGCCAGGATG 1550940 Query 160358 TGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGT-GTGTCACGTCTTG 160416 ||||||||||| | ||||||| | ||| || | || | ||||| ||| || ||| | Sbjct 1550939 TGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTG-CAGGTCCTT 1550881 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCA 160476 || || |||| ||| || || |||| || ||||| || | |||||||| ||| Sbjct 1550880 GGACAGGTCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCCA 1550821 Query 160477 GAT 160479 ||| Sbjct 1550820 GAT 1550818 Score = 140 bits (154), Expect = 5e-28 Identities = 354/531 (67%), Gaps = 8/531 (2%) Strand=Plus/Plus Query 203885 AGATAGTACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGT 203944 || ||||||||||||||||| || || || ||| ||| | ||||||| | | Sbjct 709149 AGGTAGTACATGCCGGTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATC 709208 Query 203945 TTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGC 204004 |||| || ||||||| |||||| ||||| || |||||| ||||||||||||| Sbjct 709209 TTGCCCATCGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAAGCA 709268 Query 204005 GCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC 204064 | ||||| || ||||| | || || ||| || |||||||| || |||||| || Sbjct 709269 CCACGATCGGCCGCCATCTGGACGATTTGACGCTGAGAGATCTCCCAGACGGTCTTGTAC 709328 Query 204065 ACGTCTCTGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCAT 204123 | | || ||| | || | | | | || ||| || |||||||| ||||| || Sbjct 709329 AGAGCCTTGATGTCCTCGGGGATGT-TGGGGATGTTCTGGATGGAGCCGTTCTCGGCAAT 709387 Query 204124 CAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTG 204183 | | || || | | || ||||| ||| || ||| ||| | || Sbjct 709388 GATGCGGTTCTTCATGGCGTCGGACCACAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCA 709447 Query 204184 GGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAA 204243 |||||||| | ||| || || || | || || | ||| | | | |||| ||| | Sbjct 709448 GGGGTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTA 709507 Query 204244 TGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGC 204303 || ||||| ||||||||||| | ||||||| |||||||| |||||||||||||| Sbjct 709508 GGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGGAGC 709567 Query 204304 CAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGC-GCTTCAGAGAGGTCCAGT 204362 | ||||| | |||||| ||||||| | | || |||| ||| || ||| ||| | Sbjct 709568 GACGAGCAAGCTGTTGCGGACACCGTGCTCCTTGA-TCTGCTCCTTGAGGGAGTCCCACT 709626 Query 204363 CGTGCA--TCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 | || ||| | ||| || ||| |||||||||| |||| | |||||| Sbjct 709627 CCCACAGGTCGGA--GGGCTTGACGTCCCACATGTCATACTGCAGGATGCC 709675 Score = 125 bits (138), Expect = 1e-23 Identities = 446/682 (65%), Gaps = 20/682 (3%) Strand=Plus/Plus Query 204923 CCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATT 204982 |||| | || |||||| ||||||||| ||| |||||||| | |||||| || | Sbjct 710106 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTA 710165 Query 204983 CCGTTCTCCATCTGAGATCGCAGAATGTGGGTCCACAA-TTC---GCGAGCCTCCACTTG 205038 ||| |||| |||||| ||| ||| | ||||| ||| ||| | | |||| Sbjct 710166 CCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGGATGGTCTTG 710225 Query 205039 CTTC-ACGTACATCCCTTGAGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGT 205097 | | |||| | || || |||||| ||| |||||| ||| |||| || |||| Sbjct 710226 CGGCCACGTCCCTCGCT-----CTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGT 710280 Query 205098 ACACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTT 205157 | ||| || || || |||| ||||| ||||| || | ||| | | | |||| Sbjct 710281 AGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAGGT--TCTT 710338 Query 205158 -TC-ACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCT 205215 || || | || ||| || || ||| ||||||||| | ||||| || || || | Sbjct 710339 CTCGACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGCGCG 710398 Query 205216 AATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCC 205274 || | || | || ||||||| | || || ||| | | | ||||||||||| Sbjct 710399 AACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGG-AAGTCAAAGACGTCGGCGTGCC 710457 Query 205275 ACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGC 205334 | ||||| | | | ||| | || || || | |||||| || |||||||| || | Sbjct 710458 AGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGACGTATC 710517 Query 205335 GAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 ||| | |||||| ||||||||||| || | | ||||||| ||| ||||| |||| Sbjct 710518 GAGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGGTGC 710577 Query 205395 TGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAAC 205454 | ||| ||||| || | | | | || | | ||||| || |||| Sbjct 710578 CGGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAAACCAATACCACCAGCCA 710637 Query 205455 ACTTGGCGATCTGGGCGCAC-TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCC 205513 ||||| |||| ||| ||| |||| ||||||| |||||| || | ||| |||||| Sbjct 710638 TCTTGGAGATCATGGCACACGTCTT-CAGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 710696 Query 205514 GCCAGTGTC-ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAG 205572 || |||| ||||| |||| || | ||||| ||| ||| || || | |||||| Sbjct 710697 TTCA-TGTCGACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCAGCATTGAAGAG 710755 Query 205573 CGTGGGGCTGGCGTGGCTGAAG 205594 |||||| ||| ||| ||||| Sbjct 710756 GGTGGGGGAGGCATGGGTGAAG 710777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155070787280