Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 4e-28
seq3 125 8e-24
>seq2
Length=5759010
Score = 140 bits (154), Expect = 4e-28
Identities = 165/221 (75%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||||| ||||| ||||||||| || ||||| |
Sbjct 3574592 CGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 3574533
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||||||||| || |||| |||||||||||| | || | || |||||||
Sbjct 3574532 TCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 3574473
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
||| |||||| ||||| ||| | | | |||||| || ||||| || | |||||
Sbjct 3574472 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 3574414
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598
|| || ||||| || || || || || || ||||| ||||
Sbjct 3574413 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 3574373
Score = 138 bits (152), Expect = 1e-27
Identities = 158/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||||| || |||||||| ||||| ||||||||| ||||| || |||| ||
Sbjct 4159834 ACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGACCGTCTTCC 4159893
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || ||||| |||| |||||||||||| | || | | ||||||||||
Sbjct 4159894 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGA 4159953
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| ||||| ||| | | | || || |||||||| |||| || || || ||
Sbjct 4159954 ATCTTGGACTTGA-CGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTT 4160012
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||||| || ||||| ||||| |||||
Sbjct 4160013 ACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| |||| || |||||||| || || ||||||||| |||||||| |||| ||
Sbjct 4160062 ACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCC 4160121
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || ||||| |||| |||||||||||| | || | | ||| |||||| |
Sbjct 4160122 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGG 4160181
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| ||||| ||| | | | || ||| ||||| || |||| ||||| || ||
Sbjct 4160182 ATCTTGGACTTGA-CGTTGTCGATGGTATCGGATGATTCGACCTCCAGGGTGATAGTCTT 4160240
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || || ||||| |||||
Sbjct 4160241 TCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270
Score = 107 bits (118), Expect = 2e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || || || | || ||||||||||| || |||||
Sbjct 4160593 CTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAA 4160652
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | || |||||||||| ||||| ||| | |
Sbjct 4160653 GATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACATT 4160712
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | |||||| ||| || || || | |||||||| ||||| || || || || ||
Sbjct 4160713 GTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 4160772
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 4160773 GAAGATCTGCAT 4160784
Score = 95.1 bits (104), Expect = 1e-14
Identities = 131/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || || || |||| || ||||||||||| || ||
Sbjct 4160307 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 4160366
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 4160367 GATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 4160425
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| || || || || | || || || ||||| ||||| || || |
Sbjct 4160426 TGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGA 4160485
Query 46581 C 46581
|
Sbjct 4160486 C 4160486
>seq3
Length=4316785
Score = 125 bits (138), Expect = 8e-24
Identities = 137/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| || || || | || ||||||||||| || ||||| |
Sbjct 838096 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 838155
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
|||| ||||||||||| | || | || |||||||||| |||||| ||||| |
Sbjct 838156 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 838215
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||||| || || || || | |||||||| ||||||||||| || || || |
Sbjct 838216 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 838275
Query 46584 AG 46585
||
Sbjct 838276 AG 838277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238308148760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |