Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq3 125 8e-24 >seq2 Length=5759010 Score = 140 bits (154), Expect = 4e-28 Identities = 165/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || |||||||| ||||| ||||||||| || ||||| | Sbjct 3574592 CGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCA 3574533 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||||||||||||||| || |||| |||||||||||| | || | || ||||||| Sbjct 3574532 TCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 3574473 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| ||| | | | |||||| || ||||| || | ||||| Sbjct 3574472 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGAT 3574414 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 || || ||||| || || || || || || ||||| |||| Sbjct 3574413 CGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGC 3574373 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||||||||| || |||||||| ||||| ||||||||| ||||| || |||| || Sbjct 4159834 ACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGACCGTCTTCC 4159893 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| |||| |||||||||||| | || | | |||||||||| Sbjct 4159894 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGA 4159953 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | || || |||||||| |||| || || || || Sbjct 4159954 ATCTTGGACTTGA-CGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTT 4160012 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || ||||| ||||| ||||| Sbjct 4160013 ACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||| || |||||||| || || ||||||||| |||||||| |||| || Sbjct 4160062 ACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCC 4160121 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| |||| |||||||||||| | || | | ||| |||||| | Sbjct 4160122 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGG 4160181 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||||| ||| | | | || ||| ||||| || |||| ||||| || || Sbjct 4160182 ATCTTGGACTTGA-CGTTGTCGATGGTATCGGATGATTCGACCTCCAGGGTGATAGTCTT 4160240 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || ||||| ||||| Sbjct 4160241 TCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || | || ||||||||||| || ||||| Sbjct 4160593 CTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAA 4160652 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| ||||| ||| | | Sbjct 4160653 GATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACATT 4160712 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| ||| || || || | |||||||| ||||| || || || || || Sbjct 4160713 GTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 4160772 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 4160773 GAAGATCTGCAT 4160784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || || || |||| || ||||||||||| || || Sbjct 4160307 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 4160366 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 4160367 GATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 4160425 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | || || || ||||| ||||| || || | Sbjct 4160426 TGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGA 4160485 Query 46581 C 46581 | Sbjct 4160486 C 4160486 >seq3 Length=4316785 Score = 125 bits (138), Expect = 8e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || ||||||||||| || ||||| | Sbjct 838096 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 838155 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| ||||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 838156 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 838215 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||| || || || || | |||||||| ||||||||||| || || || | Sbjct 838216 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 838275 Query 46584 AG 46585 || Sbjct 838276 AG 838277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238308148760