Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq7 347 1e-90
seq2 131 2e-25
seq3 102 8e-17
>seq7
Length=2761852
Score = 347 bits (384), Expect = 1e-90
Identities = 582/828 (70%), Gaps = 23/828 (3%)
Strand=Plus/Minus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
|||||||| || || || || || ||| ||| ||| | |||||| || |||||||||
Sbjct 1551644 TTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATAAAGTCAAAGGGGTTG 1551585
Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741
| | ||||| ||| | |||||| || |||| ||||| | |||||| || ||
Sbjct 1551584 GACGACTTGTACACCTTCTCGTTGCCGAG-AG--CGACCAGCAGGCGGTCGGCAACAAAT 1551528
Query 132742 TCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCT 132798
|| ||||| ||| ||| |||| | | || | ||||||||| |||| ||||| ||
Sbjct 1551527 TCAATGTACTGCTTCATCAGGTT--GGAGTTCATGCCCAGCAGAGCGCAA-GGCAGGGCC 1551471
Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858
||||| || || ||||||||| ||| |||||||||| ||| || | | | ||
Sbjct 1551470 TCGGTCAGGAACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCGCGGATCACCTCC 1551411
Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918
||| | || | | || || | || || ||| |||||||| |||| |||
Sbjct 1551410 TTGCTGGCGCGGTTCTTCAGGTGGGAGTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCC 1551351
Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978
||||| | || ||||| |||||| || |||| |||||||||||| || || || |||
Sbjct 1551350 TCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCCCGCTTCTTG 1551291
Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038
||||| || |||| ||| || || ||||||| ||||||||||| || || ||
Sbjct 1551290 AGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCA 1551231
Query 133039 ACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096
|||||||||| | | || | || ||||| | |||| ||||| || | ||||| || |
Sbjct 1551230 ACCAGGCGCTGGGCAAAGGAGGAGTTCTTGTCCTGG--ATCCATCGGATAGCCCAGTCAG 1551173
Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156
|||| | || ||| || || || || || ||||| || | | || | | || |
Sbjct 1551172 CCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAGAG--GTAGCTGCGCTGGCT 1551115
Query 133157 AGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214
| | | ||| ||||||||||| ||| ||| | || ||||||| |||||||||
Sbjct 1551114 GTGCTCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGTATGTTCTCCAT 1551055
Query 133215 GGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACG 133274
||| || |||||||| ||||| || |||||| | ||| || || ||| ||
Sbjct 1551054 CATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCCGCTGAAGCG 1550995
Query 133275 CTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTT 133334
||||||||| || ||||||||||||||||| ||||||||| |||||||| | |||
Sbjct 1550994 CTCGACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAAGGCCAGGATGTGAGA 1550935
Query 133335 GATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAG 133391
|||||| | ||||| ||||||| ||| | ||||||| || ||||||||||||
Sbjct 1550934 GATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGGTCCTTGGACAG 1550875
Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||| | ||||||| | ||||| || || |||||||| || ||||||||
Sbjct 1550874 GTCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 1550827
>seq2
Length=5759010
Score = 131 bits (144), Expect = 2e-25
Identities = 163/218 (75%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| || || || |||||| | || ||||| | ||
Sbjct 4160270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAATCATCC 4160211
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || || |||| ||||||||||| |||||| | |||||
Sbjct 4160210 GATACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCA 4160152
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || |||| ||| || || |||||||| |||| ||||| || | |||||||||
Sbjct 4160151 GCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACTACAA 4160092
Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459
||| || ||||| ||| || ||||| ||||| || |||
Sbjct 4160091 CATTCAGAAGGAGAGC-ACCCTGCACTTGGTCCTCCGT 4160055
Score = 122 bits (134), Expect = 9e-23
Identities = 162/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || |||||||| || || |||||| | || || ||| |
Sbjct 3574375 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 3574434
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
|||||| | | | |||| | || || |||| ||||| ||||| || ||| | ||
Sbjct 3574435 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 3574493
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||||| || || | || ||||| ||||| || || | |||||||| | ||||||
Sbjct 3574494 CCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 3574553
Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458
||||||||| ||||| ||| || || || |||| |||||
Sbjct 3574554 CAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTCCTGCG 3574592
Score = 114 bits (126), Expect = 1e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | ||
Sbjct 4160784 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 4160725
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || || || | ||||| ||||| ||||| | |||||
Sbjct 4160724 GACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 4160665
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||| | ||| || || ||||| || || | || |||||| |||||||||
Sbjct 4160664 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAAC 4160605
Query 38424 ATCCAAAAGGA 38434
||||| |||||
Sbjct 4160604 ATCCAGAAGGA 4160594
Score = 96.9 bits (106), Expect = 3e-15
Identities = 105/137 (77%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| || || | ||||| ||||| || |||| ||| || || ||||||||
Sbjct 4159949 GACAAGGAGGGTATCCCTCCTGACCAGCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAA 4159890
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455
|||| || || || | ||||||||||||||| ||||| ||| || |||||| |||| ||
Sbjct 4159889 GACGGTCGGACTCTGAGCGACTACAACATCCAGAAGGAGAGC-ACTCTGCATCTGGTTCT 4159831
Query 38456 GCGTTTGAGAGGCGGCC 38472
||| | | || ||||
Sbjct 4159830 CCGTCTCCGTGGTGGCC 4159814
Score = 96.9 bits (106), Expect = 3e-15
Identities = 132/182 (73%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || || || ||||| || || || |||| || ||| || | |||| | |
Sbjct 4160488 TCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTTGAGTCCTCTGACACCATCG 4160429
Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| |||| | || || |||| ||||| ||||| ||||| | ||||| ||||| |||
Sbjct 4160428 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTC 4160370
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | || ||||| ||||| || |||| || |||||| |||||||||||||| |||
Sbjct 4160369 ATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATCCAGAAG 4160310
Query 38433 GA 38434
||
Sbjct 4160309 GA 4160308
>seq3
Length=4316785
Score = 102 bits (112), Expect = 8e-17
Identities = 131/181 (72%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312
||||| || || || |||||||| ||||||||| | || |||||| || |||||| |
Sbjct 838276 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 838217
Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372
| | | || || |||| ||||| ||||| |||||| | ||||| ||||| |
Sbjct 838216 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 838157
Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432
|| | ||| || || ||||| || || | || ||||| ||||||||||||||| |||
Sbjct 838156 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAG 838097
Query 38433 G 38433
|
Sbjct 838096 G 838096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172718721920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |