Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 347 1e-90 seq2 131 2e-25 seq3 102 8e-17 >seq7 Length=2761852 Score = 347 bits (384), Expect = 1e-90 Identities = 582/828 (70%), Gaps = 23/828 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || ||| ||| ||| | |||||| || ||||||||| Sbjct 1551644 TTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATAAAGTCAAAGGGGTTG 1551585 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| ||| | |||||| || |||| ||||| | |||||| || || Sbjct 1551584 GACGACTTGTACACCTTCTCGTTGCCGAG-AG--CGACCAGCAGGCGGTCGGCAACAAAT 1551528 Query 132742 TCGATGTATTGCGACAT--GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCT 132798 || ||||| ||| ||| |||| | | || | ||||||||| |||| ||||| || Sbjct 1551527 TCAATGTACTGCTTCATCAGGTT--GGAGTTCATGCCCAGCAGAGCGCAA-GGCAGGGCC 1551471 Query 132799 TCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCC 132858 ||||| || || ||||||||| ||| |||||||||| ||| || | | | || Sbjct 1551470 TCGGTCAGGAACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCGCGGATCACCTCC 1551411 Query 132859 GCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCC 132918 ||| | || | | || || | || || ||| |||||||| |||| ||| Sbjct 1551410 TTGCTGGCGCGGTTCTTCAGGTGGGAGTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCC 1551351 Query 132919 TCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTG 132978 ||||| | || ||||| |||||| || |||| |||||||||||| || || || ||| Sbjct 1551350 TCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCCCGCTTCTTG 1551291 Query 132979 AGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC 133038 ||||| || |||| ||| || || ||||||| ||||||||||| || || || Sbjct 1551290 AGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCAAAGGCA 1551231 Query 133039 ACCAGGCGCTCGCCGAACGTGGC-TTCTT-TGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 |||||||||| | | || | || ||||| | |||| ||||| || | ||||| || | Sbjct 1551230 ACCAGGCGCTGGGCAAAGGAGGAGTTCTTGTCCTGG--ATCCATCGGATAGCCCAGTCAG 1551173 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156 |||| | || ||| || || || || || ||||| || | | || | | || | Sbjct 1551172 CCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAGAG--GTAGCTGCGCTGGCT 1551115 Query 133157 AGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCAT 133214 | | | ||| ||||||||||| ||| ||| | || ||||||| ||||||||| Sbjct 1551114 GTGCTCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGTATGTTCTCCAT 1551055 Query 133215 GGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACG 133274 ||| || |||||||| ||||| || |||||| | ||| || || ||| || Sbjct 1551054 CATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCTCGCCGCTGAAGCG 1550995 Query 133275 CTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTT 133334 ||||||||| || ||||||||||||||||| ||||||||| |||||||| | ||| Sbjct 1550994 CTCGACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAAGGCCAGGATGTGAGA 1550935 Query 133335 GATGAAATGGCGCTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAG 133391 |||||| | ||||| ||||||| ||| | ||||||| || |||||||||||| Sbjct 1550934 GATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAGTCGTGCAGGTCCTTGGACAG 1550875 Query 133392 GTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||| | ||||||| | ||||| || || |||||||| || |||||||| Sbjct 1550874 GTCAATCTCCTCGGCAGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 1550827 >seq2 Length=5759010 Score = 131 bits (144), Expect = 2e-25 Identities = 163/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || || |||||| | || ||||| | || Sbjct 4160270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAATCATCC 4160211 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || || |||| ||||||||||| |||||| | ||||| Sbjct 4160210 GATACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCA 4160152 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| || || |||||||| |||| ||||| || | ||||||||| Sbjct 4160151 GCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACTACAA 4160092 Query 38423 CATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| ||| || ||||| ||||| || ||| Sbjct 4160091 CATTCAGAAGGAGAGC-ACCCTGCACTTGGTCCTCCGT 4160055 Score = 122 bits (134), Expect = 9e-23 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || |||||||| || || |||||| | || || ||| | Sbjct 3574375 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 3574434 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | |||| | || || |||| ||||| ||||| || ||| | || Sbjct 3574435 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 3574493 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | || ||||| ||||| || || | |||||||| | |||||| Sbjct 3574494 CCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 3574553 Query 38420 CAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||| ||||| ||| || || || |||| ||||| Sbjct 3574554 CAACATCCAGAAGGAGAGC-ACCCTCCACCTGGTCCTGCG 3574592 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| | || Sbjct 4160784 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 4160725 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || || | ||||| ||||| ||||| | ||||| Sbjct 4160724 GACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 4160665 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | ||| || || ||||| || || | || |||||| ||||||||| Sbjct 4160664 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAAC 4160605 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 4160604 ATCCAGAAGGA 4160594 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| || || | ||||| ||||| || |||| ||| || || |||||||| Sbjct 4159949 GACAAGGAGGGTATCCCTCCTGACCAGCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAA 4159890 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCT 38455 |||| || || || | ||||||||||||||| ||||| ||| || |||||| |||| || Sbjct 4159889 GACGGTCGGACTCTGAGCGACTACAACATCCAGAAGGAGAGC-ACTCTGCATCTGGTTCT 4159831 Query 38456 GCGTTTGAGAGGCGGCC 38472 ||| | | || |||| Sbjct 4159830 CCGTCTCCGTGGTGGCC 4159814 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || || || ||||| || || || |||| || ||| || | |||| | | Sbjct 4160488 TCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTTGAGTCCTCTGACACCATCG 4160429 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | || || |||| ||||| ||||| ||||| | ||||| ||||| ||| Sbjct 4160428 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTC 4160370 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || |||| || |||||| |||||||||||||| ||| Sbjct 4160369 ATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATCCAGAAG 4160310 Query 38433 GA 38434 || Sbjct 4160309 GA 4160308 >seq3 Length=4316785 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| || |||||| | Sbjct 838276 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 838217 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||| |||||| | ||||| ||||| | Sbjct 838216 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 838157 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| || || ||||| || || | || ||||| ||||||||||||||| ||| Sbjct 838156 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAG 838097 Query 38433 G 38433 | Sbjct 838096 G 838096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172718721920