Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3 235 7e-57 seq4 123 3e-23 seq7 98.7 1e-15 >seq3 Length=4316785 Score = 235 bits (260), Expect = 7e-57 Identities = 467/689 (68%), Gaps = 8/689 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || || || | ||||| || |||||||| Sbjct 1321929 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCC 1321988 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 1321989 TCCTCAATGGTCAGGAGGGACACATCGAAGGTACCACCACCGAGATCGAAGATGAGCACG 1322048 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | || ||||| || || ||||| ||||| || || || || || || Sbjct 1322049 TTGCGCTCGCCCTCGACCTTCTTGTCAAGGCCGTAGGCGATGGCAGCGGCGGTGGGCTCG 1322108 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || ||||| | || || || || || || || Sbjct 1322109 TTGATGATACGCAGGACGTTGAGACCGGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 1322168 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || | ||| |||| |||| | |||| || Sbjct 1322169 TGGCTGTCGTTGAAGTAGGCGGGGACAGTGATGACGGCGTTGTTGACAGTGGTACCAAGG 1322228 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||| ||||| || ||||| || || ||||| || | | Sbjct 1322229 TAGGCCTCGGCGGTCTCACGCATCTTGGTCAGGACCATGGAGGAGATCTCCTCGGGGGTG 1322288 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC-CGGG 7875 || ||| | || || || || ||||| || || | ||| || | || | | Sbjct 1322289 AAGGTCTTCTTCTCGCCCTTGAACTCAACCTCGATAACGGGCTT----GGAGTTCTTGTC 1322344 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | | | ||||| ||| | ||||||| |||| | ||||| | Sbjct 1322345 GATGACCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGGTCGGCGAACTTGCG 1322404 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || | ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 1322405 GCCAATCAACCGCTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTT 1322464 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || || || || || ||||| || | || || || || ||| |||| || ||||| Sbjct 1322465 GGCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAGGCAACGAACGAGGGCGTCGT 1322521 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 ||| || || |||||||| || || || || ||||| | | ||| |||||||| Sbjct 1322522 TCGGTTACCCTGGTCGTTGGCGATGATATCACATCGGTCCTCACGGAAGATACCGACGCA 1322581 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGA 8144 || || || || || || || ||||||| Sbjct 1322582 TGAGTAGGTAGTACCCAAGTCGATACCGA 1322610 >seq4 Length=3617723 Score = 123 bits (136), Expect = 3e-23 Identities = 209/302 (69%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || | ||||||||||| || || || ||||| || ||||| |||| ||| Sbjct 1830339 TCGAAGTCCTGGCCACCCAAGTGGGTGTCACCAGCGGTAGCCTTGACGGTGAAGACACCG 1830280 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || | ||||| | || || ||||| || |||||||||||||| || | || || ||| Sbjct 1830279 CCCTGGATGTTCAGCAGGGAGACATCGAAGGTACCACCACCCAGATCGTAGATCAGGACG 1830220 Query 7577 TTCGTATCGTCGTCTTTGTTCTT---ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || || | ||| | || | | |||||||| ||||| || || || || || Sbjct 1830219 TTGCGCTCCTTGTCAGTCTTGCCGGCACCAAGACCGTAGGCGATGGCAGCAGCAGTGGGC 1830160 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| || ||| ||||||||||| | | ||||| || || || || Sbjct 1830159 TCGTTGATGATACGGAGGACGTTGAGGCCAGCAATGGCACCAGCATCCTTGGTAGCCTGA 1830100 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| ||||| || | ||| || | | || ||||| || Sbjct 1830099 CGCTGGTTGTCGTTGAAGTAGGCAGGGACGGTGATGACAGCCTTCTCAACCTTCTTGCCA 1830040 Query 7754 AG 7755 || Sbjct 1830039 AG 1830038 >seq7 Length=2761852 Score = 98.7 bits (108), Expect = 1e-15 Identities = 336/520 (65%), Gaps = 13/520 (3%) Strand=Plus/Plus Query 105559 TCAACGCGTTTCATGAACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTC 105618 || || || |||||||| | ||| |||||||||| ||| || ||||| ||| | Sbjct 710340 TCGACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGCGCGA 710399 Query 105619 GCCTCTTCATCACCTTGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCAT 105678 |||| || | ||| || ||| || | || || || || | | ||||||||||| Sbjct 710400 ACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGTGCCAG 710459 Query 105679 GGTTCTAAATAGACTGCAATAGACCCTTTACGACGCC-----CCGCT-TGATTGACATAT 105732 || || | |||| |||| | || | ||||| |||| || | ||| ||| Sbjct 710460 GGCTCGAGGTAGATGGCAAAGGCACC---AGGACGCTTGTTGCCGCCCTGGTCGACGTAT 710516 Query 105733 CTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTT 105792 | || || ||| | ||||| | ||| || ||||| || | ||| || || || || Sbjct 710517 CGAGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGGTG 710576 Query 105793 CCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCC 105852 || ||| | || | ||||| | ||| |||| || |||||||| |||||| Sbjct 710577 CCGGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAAACCAATACCACCAGCC 710636 Query 105853 CACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCC 105912 ||| ||| |||||| || | || ||||| ||||| || || || || ||| Sbjct 710637 ATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCGTAGATACCCTCAATGCTGTCGTCC 710696 Query 105913 TTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGA 105972 || | | | |||||| || || |||| || | | || |||||||||||||| || Sbjct 710697 TTCATGTCGACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCAGCATTGAAGAGG 710756 Query 105973 GTTGGTGTTGCATGAATGAACAAACCTT--TCGATAACGCTTCGTATGTTTCCAGGACGT 106030 || || | ||||| |||| || ||| | || | | |||||| || || || Sbjct 710757 GTGGGGGAGGCATGGGTGAAGAA--CTTGCTGGACATGAGGTGGTATGTCTCGAGAACAC 710814 Query 106031 GATCAATATCGTGTCCATGAATACCAATAGCGACGCGCAT 106070 | ||||| |||| ||| || |||| || || ||||| Sbjct 710815 GCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCAT 710854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132696790920