Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 6e-24
>seq2
Length=5759010
Score = 125 bits (138), Expect = 6e-24
Identities = 259/380 (68%), Gaps = 8/380 (2%)
Strand=Plus/Minus
Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067
|||||||||| || || |||||| ||||| |||||||| |||| | ||| |
Sbjct 4488032 TGTGGCACGGCGGCAGGGCCATGCTCTTGAAGTCGCGCGGGTTCCACGCGCTGAGGATCA 4487973
Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127
| |||||||| | |||||| | | | || ||| | |||||| || || |
Sbjct 4487972 TCCGCCTGTCGTAGGGGTTGGTGCGCAGCTTGTGGACGATCTCGGCCAGCTGGTCGACAC 4487913
Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187
|| | |||| |||||| || | ||| |||||| || || || |||| ||||||||
Sbjct 4487912 CCTTGCCCGTGTAGTCAGCGCCGGCGTCGACGTACTCGGCGCCAAAGTGCCGCCACTGGA 4487853
Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30247
| ||||| || || |||||||| || | || | |||| | ||| |||| | |
Sbjct 4487852 AGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGTCAGGCCGACGCTGTCGAGGA 4487793
Query 30248 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCGGAGAGCTCTTTG-- 30303
| || | ||| |||||| ||||||||||||| || || | || | ||| || ||| |
Sbjct 4487792 ACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCTGAGGGC-CTTGGAC 4487734
Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30363
||| | || ||||| || |||||| || ||||| | |||||||| |||||
Sbjct 4487733 GAGGTGTTG--CCCTC-GATGAACCAGAGGAGCTCGGCGACGACGGCGCGGAGGAAGACA 4487677
Query 30364 CTCTTGGTCGTGAGGAGGGG 30383
| ||| || |||||||||||
Sbjct 4487676 CGCTTCGTGGTGAGGAGGGG 4487657
Score = 120 bits (132), Expect = 2e-22
Identities = 151/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825
||| || || | ||||| | ||||||||| ||||| || | || | ||| || | |||
Sbjct 4488331 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTTAAGGGCATCGATGTGGTCGATGTA 4488272
Query 29826 GACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884
|||||| |||||||||| | ||| | | || |||||| | || || ||||| |
Sbjct 4488271 GACGTGGGCGTCTCCCATGACGTGTGTGAGGCT-TCCCGGCACCAGGTCGCACACGTGGG 4488213
Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944
| | ||||| |||||| || | |||||| || ||||| ||||| | ||||| |||||||
Sbjct 4488212 CGAGCATGTGCGTGAGAAGCGCGTAGCTTGCAATGTTGAAGGGGATGCCGAGGCCCATGT 4488153
Query 29945 CCCCCGACCTCTGGTAGAGCTGACA 29969
| | |||| |||||||||||| ||
Sbjct 4488152 CGCAGGACCGCTGGTAGAGCTGGCA 4488128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617535259649
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |