Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 >seq2 Length=5759010 Score = 125 bits (138), Expect = 6e-24 Identities = 259/380 (68%), Gaps = 8/380 (2%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 |||||||||| || || |||||| ||||| |||||||| |||| | ||| | Sbjct 4488032 TGTGGCACGGCGGCAGGGCCATGCTCTTGAAGTCGCGCGGGTTCCACGCGCTGAGGATCA 4487973 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127 | |||||||| | |||||| | | | || ||| | |||||| || || | Sbjct 4487972 TCCGCCTGTCGTAGGGGTTGGTGCGCAGCTTGTGGACGATCTCGGCCAGCTGGTCGACAC 4487913 Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187 || | |||| |||||| || | ||| |||||| || || || |||| |||||||| Sbjct 4487912 CCTTGCCCGTGTAGTCAGCGCCGGCGTCGACGTACTCGGCGCCAAAGTGCCGCCACTGGA 4487853 Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30247 | ||||| || || |||||||| || | || | |||| | ||| |||| | | Sbjct 4487852 AGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGTCAGGCCGACGCTGTCGAGGA 4487793 Query 30248 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCGGAGAGCTCTTTG-- 30303 | || | ||| |||||| ||||||||||||| || || | || | ||| || ||| | Sbjct 4487792 ACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCTGAGGGC-CTTGGAC 4487734 Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACC 30363 ||| | || ||||| || |||||| || ||||| | |||||||| ||||| Sbjct 4487733 GAGGTGTTG--CCCTC-GATGAACCAGAGGAGCTCGGCGACGACGGCGCGGAGGAAGACA 4487677 Query 30364 CTCTTGGTCGTGAGGAGGGG 30383 | ||| || ||||||||||| Sbjct 4487676 CGCTTCGTGGTGAGGAGGGG 4487657 Score = 120 bits (132), Expect = 2e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 ||| || || | ||||| | ||||||||| ||||| || | || | ||| || | ||| Sbjct 4488331 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTTAAGGGCATCGATGTGGTCGATGTA 4488272 Query 29826 GACGTGAGCGTCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 |||||| |||||||||| | ||| | | || |||||| | || || ||||| | Sbjct 4488271 GACGTGGGCGTCTCCCATGACGTGTGTGAGGCT-TCCCGGCACCAGGTCGCACACGTGGG 4488213 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | | ||||| |||||| || | |||||| || ||||| ||||| | ||||| ||||||| Sbjct 4488212 CGAGCATGTGCGTGAGAAGCGCGTAGCTTGCAATGTTGAAGGGGATGCCGAGGCCCATGT 4488153 Query 29945 CCCCCGACCTCTGGTAGAGCTGACA 29969 | | |||| |||||||||||| || Sbjct 4488152 CGCAGGACCGCTGGTAGAGCTGGCA 4488128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617535259649