Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7 273 4e-68 >seq7 Length=2761852 Score = 273 bits (302), Expect = 4e-68 Identities = 846/1280 (66%), Gaps = 57/1280 (4%) Strand=Plus/Plus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGA 221478 ||||| || ||||| |||||||| |||||| |||||| || ||| | ||||| ||||| Sbjct 709746 AGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAG-CTCGCGAGCCTCAGGAGA 709804 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||||| |||||| | || |||| || || ||||| || |||| ||| || Sbjct 709805 CTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACACCAAT 709864 Query 221539 GGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCG 221596 || | ||| | | ||||| | |||| | || |||| || || ||| ||| || || Sbjct 709865 AGGTCGGTGGCGCATGTTGCTGTTGCGGGC-CTCCTGG-ACAGGGTAATGGTTCACATCA 709922 Query 221597 ATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTG 221656 || | ||||||||| | || || || || ||| ||||||| || Sbjct 709923 ATGATGCGGTTGAGGTTACGGACGACCACCTTGGTGACTTCGTGAAGCTTCT------TG 709976 Query 221657 AACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCC 221716 || | | || || |||| | | || || || ||| ||||| | |||| Sbjct 709977 AAGTCGTA---GCATCCTTCGTTGTAG---TCGACGAAGGCGGGGAGGGCCAGAGAGGCC 710030 Query 221717 AGGTTACACACGGCCACCTCGTCCTTGTTGGTA---TACTGTATGATCTCTGTACAGAGG 221773 | ||| || || || ||||| || | || | |||| |||||||| || |||||| Sbjct 710031 AAGTTGCAGACAGCAACCTCATC---GGGGGCACAGTACTCGATGATCTCAGTGCAGAGG 710087 Query 221774 TT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TC 221829 || ||||| ||| || ||||||| || || || |||||| ||| ||| | || Sbjct 710088 TTAGAGCTGCG---GATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGATC 710143 Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889 |||||||||||| ||||| || ||||| ||||||| |||| || || ||| || Sbjct 710144 CTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAG 710203 Query 221890 TTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGA 221948 | |||| |||| | ||| | | | |||||| ||| | | || || ||| Sbjct 710204 CT-TCTGAGCGCGGATGGTCTTGCGGCCACGTCCCTCGCTCTCGTACTTTTCG-TACAGA 710261 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || | |||||| || ||||| || | ||||| || || | ||| ||||| | Sbjct 710262 GCCT--CAAACTCCTCGCCGTAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGA 710319 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 | |||||| | ||| | | ||| | || ||||||||| || || |||||||| || Sbjct 710320 GCGTCCAGTCCAGGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAA 710379 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 | || || || | | || ||||||| |||| ||| || | ||||| | || | Sbjct 710380 GGAACAGGTCGCGAGCGCGAACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAAGT 710439 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 |||| | ||| |||||||| ||||| || |||| ||| | || || || |||||||||| Sbjct 710440 CAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGC 710499 Query 222189 CACCCTGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 | ||||| || || ||| ||| | |||||||| || || | || | | || Sbjct 710500 CGCCCTGGTCGACGTATC--GAGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCC 710557 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG-C 222303 |||||| ||||||||||| |||||| | ||| ||| | || | | ||| | Sbjct 710558 GTTGGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCAC---GGATGCGGTGGAC 710614 Query 222304 AGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 || || |||||||| || || ||||||||||| || |||| |||||||| Sbjct 710615 GTTCAAACCAATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCGTA 710674 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 ||| ||||| || ||| ||||| | || | ||| || || || |||| ||| | || Sbjct 710675 GATACCCTCAATGCTGTCGTCCTTCATGTCGACCAGGAAGCATGAGGACAGCTGGGCTTG 710734 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 | || || || || || || ||||| ||| || || ||| | || ||||| || Sbjct 710735 CGGGGTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAG 710794 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGC--ATGGCGCATCT 222540 | ||| ||||| | || | | |||| ||| ||| || ||| | ||| || Sbjct 710795 GTGGTATGTCTCGAGAACACGCTCAATGTCGTCTCCCCAGA---TGCCAACGGCCACTCG 710851 Query 222541 CATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTACGAT 222598 |||| ||||| ||| |||| ||| ||| || | ||||| ||| ||||| ||| Sbjct 710852 CATGATCATGTGCTGTGGCCGCTCGACAATCTTGCCGTCGAGCT--TGAGGAGGTATGAT 710909 Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658 ||||| |||||||| |||||||| | | || ||||||| | ||| || | |||| Sbjct 710910 CGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGCG 710969 Query 222659 GCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 710970 GAGTCGAGCTCCTCCTTGTG 710989 Score = 235 bits (260), Expect = 1e-56 Identities = 566/856 (66%), Gaps = 22/856 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||| ||||| |||||||| ||| Sbjct 1550818 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACTGCCGAGGAGATTGACCTG 1550877 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 |||||||| || ||| |||| || || || | | |||||| || | || || Sbjct 1550878 TCCAAGGACCTGCACGACTGGAACAACCGC-CTGAACGATGACGAGAAGTACTTCATCTC 1550936 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | |||| ||||| || ||||| || || || || |||||||| ||| |||| | Sbjct 1550937 TCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTGGTCGAGCG 1550996 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| | | || || ||| ||||| || |||||||| |||||||| || Sbjct 1550997 CTTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGAT 1551056 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| ||| | ||| || || || ||||| | || Sbjct 1551057 GGAGAACATACACTCCGAGACGTACTC---GCTGCTCATCGACACTTACATCAAGGAGCA 1551113 Query 25770 CGCCGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | | || | || | || || || || ||| ||| || ||||| | ||||| Sbjct 1551114 CAGCCAGCGCAGCTAC-CTCTTCAACGCGATTGAGACCATTCCTTGCATCCGCAAGAAGG 1551172 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAG 25888 | ||||| || |||||| | | ||| | | | |||| | |||| ||||| | Sbjct 1551173 CTGACTGGGCTATCCGATGGATCCAGGACAAGAACTCCTCCTTTGCCCAGCGCCTGGTTG 1551232 Query 25889 CCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCA 25948 ||||||| || || ||||| ||||| ||||||||| | ||||| ||||||||||||||| Sbjct 1551233 CCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCA 1551292 Query 25949 AGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || ||| ||||||||| ||| ||||||||||||||||||| | ||||||| Sbjct 1551293 AGAAGCGGGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCGCGTGACGAGG 1551352 Query 26009 GTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC-- 26066 |||| |||| || |||||||||||||| || | |||| || | || | | Sbjct 1551353 GTCTGCACACGGACTTTGCCTGCCTGCTGCACTC---CCAC---CTGAAGAACCGCGCCA 1551406 Query 26067 TCAA-GAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNN 26125 ||| ||| || | ||||||| || || || |||||| ||||||| | Sbjct 1551407 GCAAGGAGGTGATCCGCGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTCCTGA 1551466 Query 26126 NNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTG 26185 ||||||||||| || || |||| || ||||||| Sbjct 1551467 CCGAGGCCCTGCCTTGCGCTCTGCTGGGCATGAACTCCAACCTGATGAAGCAGTACATTG 1551526 Query 26186 AGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTA 26245 | | ||| ||||||| |||||| | || || || | | |||| || | | Sbjct 1551527 AATTTGTTGCCGACCGCCTGCTGGTCGCTCTCGGCAACGAGAAGGTGTACAAGTCGTCCA 1551586 Query 26246 ACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGA 26305 |||| || ||||||||||| ||||| || ||| || ||||||||||||||||| ||| Sbjct 1551587 ACCCCTTTGACTTTATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGC 1551646 Query 26306 GGGTCGGCGACTATCA 26321 | |||| |||||| || Sbjct 1551647 GCGTCGCCGACTACCA 1551662 Score = 109 bits (120), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | || || | | |||||| | ||| |||||| | || Sbjct 709451 GTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGG 709510 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||||||||||||| |||||||| ||||||||||| || || Sbjct 709511 CTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGGAGCGAC 709570 Query 221236 CAGCAGACTGTTGCG 221250 |||| |||||||| Sbjct 709571 GAGCAAGCTGTTGCG 709585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844649062720