Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq2 100 2e-15
>seq2
Length=5759010
Score = 100 bits (110), Expect = 2e-15
Identities = 158/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609
||| |||||||| || ||||| || || || || || | || || || ||| ||||
Sbjct 4159821 ACGGAGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTC-GCTCAGAG 4159879
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | ||||| || ||||| ||||| ||||| || || || || |||||||| || |
Sbjct 4159880 TCCGACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATAC 4159939
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728
| |||||||| |||||||| ||||| || || ||||||| || | | || ||
Sbjct 4159940 CCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACTTCCA 4159999
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||||| || ||||| || || ||||||||||| || ||
Sbjct 4160000 -GAGTAATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTG 4160039
Score = 91.5 bits (100), Expect = 1e-12
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
||||| ||||| ||||| ||||| ||| || || | || || || | || ||
Sbjct 4160564 CGAAGGCGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTA 4160623
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | ||| || || ||||||||||| || || ||||| || || ||||||||||| ||
Sbjct 4160624 CGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCC 4160683
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730
|||||||| |||||||| || ||| || || || || | | | | || ||
Sbjct 4160684 TCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGA-CCTCGAG 4160742
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || || || |||||||| ||||| ||||| || ||
Sbjct 4160743 GGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 4160781
Score = 87.8 bits (96), Expect = 1e-11
Identities = 146/211 (69%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
||||| ||||| || || || ||||| || || | || || |||| || |||
Sbjct 4160278 CGAAGGCGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTT 4160337
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | || ||||| ||||| |||||||| || ||||| || || ||||||||||| ||
Sbjct 4160338 CGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCC 4160397
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|||||||| || ||||| ||||| || || || |||| | | || ||
Sbjct 4160398 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGA 4160457
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
||||| || || ||||| || ||||| ||||
Sbjct 4160458 GTAATCGTCTTGCCGGTCAGGGTCTTGACGA 4160488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268178642366924
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |