Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq3 242 5e-59
seq2 199 5e-46
seq4 131 2e-25
seq5 105 9e-18
>seq3
Length=4316785
Score = 242 bits (268), Expect = 5e-59
Identities = 468/684 (68%), Gaps = 5/684 (1%)
Strand=Plus/Minus
Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363
|||||||| || || ||||| |||||||| || ||| | | | | || || ||| ||
Sbjct 1322608 GGTATCGACTTGGGTACTACCTACTCATGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 1322550
Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423
|| ||| | || ||||| || ||||| || || || |||| ||||||||| || || |
Sbjct 1322549 TATCATCGCCAACGACCAGGGTAACCGAACGACGCCCTCGTTCGTTGCCTTCACCGACAC 1322490
Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483
|| ||||| |||| |||||||| || || ||| || |||||||| || || ||
Sbjct 1322489 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 1322430
Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543
||| ||||| ||||| | ||||| |||||||| | || | ||||| | ||| ||
Sbjct 1322429 CTTCGACGCCAAGCGGTTGATTGGCCGCAAGTTCGCCGACCCTGAGGTCCAGGCCGACAT 1322370
Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603
||| ||| | | | ||| | || | || ||||| | || | |||||
Sbjct 1322369 GAAGCACTTCCCCT-TCAAGGTCATCGACAAGAA-CTCC-AAGCCCGTTATCGAGGTTGA 1322313
Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663
|| | || |||||||| || | ||||| || || || || ||||| ||| ||
Sbjct 1322312 GTTCAAGGGCGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGGTCCTGACCAA 1322253
Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723
|||| ||||| || || | | | | |||| ||||| || | || || | |||||
Sbjct 1322252 GATGCGTGAGACCGCCGAGGCCTACCTTGGTACCACTGTCAACAACGCCGTCATCACTGT 1322193
Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783
|| || ||||||| || || || ||||| || |||||||| | | ||||| ||
Sbjct 1322192 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCGG 1322133
Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843
||| ||| || | || ||||| || || || || ||||| || || || || || ||
Sbjct 1322132 TCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATCGCCTACGGCCTTGA 1322073
Query 195844 CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGA 195903
|||||| || | || || || | ||||| ||||||||||||||||| || ||
Sbjct 1322072 CAAGAAGGTCGAGGGCGAGCGCAACGTGCTCATCTTCGATCTCGGTGGTGGTACCTTCGA 1322013
Query 195904 TGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATAC 195963
||| || || || | ||||| | ||||| ||||| || ||| | ||||| ||||| ||
Sbjct 1322012 TGTGTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACAC 1321953
Query 195964 TCATCTAGGTGGTGAAGATTTCGA 195987
||| | |||||||| || |||||
Sbjct 1321952 TCACTTGGGTGGTGAGGACTTCGA 1321929
Score = 116 bits (128), Expect = 5e-21
Identities = 221/326 (68%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
||||||||||||||||| || | | | ||| || | || || | || || || |||
Sbjct 2542124 AAGATGAAGGAGACTGCCGAGGCCTACCTGGCCAAGCCCGTCAAGAACGCCGTCGTCACT 2542183
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| || |||||||||| ||| | || || ||| || |||||||||| | |||||
Sbjct 2542184 GTCCCCGCTTACTTCAACGATGCCCAGCGTCAGAGCACCAAGGACGCTGGTCAGATTGCC 2542243
Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841
||||| ||| ||| | | |||| || || || || || || |||| |||||||||
Sbjct 2542244 GGTCTTAACGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCCGCTCTTGCCTATGGTCTG 2542303
Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901
| | ||||| | || || ||| ||||||||||||||||| ||
Sbjct 2542304 G------AGAAGGAGGCTGACCGCGTGGTCGCCGTCTACGATCTCGGTGGTGGTACTTTC 2542357
Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961
||| ||||| |||| | || | ||| | ||||| || ||| | || |||||
Sbjct 2542358 GATATCTCAATTCTTGAGATCCAGAACGGTGTCTTCGAGGTCAAGTCCACCAACGGTGAC 2542417
Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987
|| || || |||||||| ||||||||
Sbjct 2542418 ACCCACCTCGGTGGTGAGGATTTCGA 2542443
>seq2
Length=5759010
Score = 199 bits (220), Expect = 5e-46
Identities = 181/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| || || ||||| || || || || |||||||||||||| ||||||||
Sbjct 4160784 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 4160725
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981
||||| ||||| || | || |||||||||| || ||||| |||||||| || || |||
Sbjct 4160724 GACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 4160665
Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041
|| || || || || ||||| || ||||| || ||||| ||||||||| | || ||||||
Sbjct 4160664 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAAC 4160605
Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
| || ||||||||||| || |||||||| || | ||||| ||||||
Sbjct 4160604 ATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGCCTTCGCGGTGGT 4160557
Score = 178 bits (196), Expect = 2e-39
Identities = 169/216 (78%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933
|| || ||||| || || || || || || |||||||||||||| || ||||| |||||
Sbjct 4160486 GTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTTGAGTCCTCTGACACCATCGAC 4160427
Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993
||| |||| ||||||| || || ||||| |||||||| || || ||||| || || ||
Sbjct 4160426 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATC 4160367
Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053
|||||||| || |||||||| || || || |||||| |||| |||||| | || ||||||
Sbjct 4160366 TTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATCCAGAAGGAG 4160307
Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
|| || || ||||| || || | ||||| ||||||
Sbjct 4160306 TCCACACTCCACCTCGTCCTCCGCCTTCGCGGTGGT 4160271
Score = 159 bits (176), Expect = 5e-34
Identities = 175/233 (75%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916
|| ||||||| ||||| || || ||||| || ||||| ||||||||||| ||||| || |
Sbjct 4160275 GTGGTATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAAT 4160216
Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976
| || || || ||||| ||| |||| ||||||| || || || || || ||||| || |
Sbjct 4160215 CATCCGATACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGG 4160156
Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036
| ||||| || || ||||| |||||||| ||||| ||||| || || || || || |
Sbjct 4160155 ACCAGCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACT 4160096
Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089
||||| |||| |||||| || || ||| | || || | || || ||||||
Sbjct 4160095 ACAACATTCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGTCTCCGTGGTGGT 4160043
>seq4
Length=3617723
Score = 131 bits (144), Expect = 2e-25
Identities = 502/779 (64%), Gaps = 17/779 (2%)
Strand=Plus/Plus
Query 195663 AGATGAAGGAGACTGCGGAA-TCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721
|||||||||||| ||| || || | ||| | || ||| | | || || | ||
Sbjct 1830012 AGATGAAGGAGATTGCCGAGGTCAAGCTTGGCAAGAAGGTTGAGA-AGGCTGTCATCACC 1830070
Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781
|| ||||| ||||||| || || || ||||| || ||||| |||| ||| |||||
Sbjct 1830071 GTCCCTGCCTACTTCAACGACAACCAGCGTCAGGCTACCAAGGATGCTGGTGCCATTGCT 1830130
Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841
|| || ||| || | || ||||| || || || || ||||| || || || |||||
Sbjct 1830131 GGCCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCCATCGCCTACGGTCTT 1830190
Query 195842 GACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898
| |||| ||| | || || || |||||| ||||| |||||||||||
Sbjct 1830191 GGTGCCGGCAAGACTGACAAGGAGCGCAACGTCCTGATCTACGATCTGGGTGGTGGTACC 1830250
Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958
|| |||||||| || || || || | || ||| | ||| || |||||||| ||||||
Sbjct 1830251 TTCGATGTCTCCCTGCTGAACATCCAGGGCGGTGTCTTCACCGTCAAGGCTACCGCTGGT 1830310
Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAG 196018
|| || || | ||||| | || ||||| | || ||| || | | |||
Sbjct 1830311 GACACCCACTTGGGTGGCCAGGACTTCGACACCAACCTGCTCGACCACTGCAAGAAGGAG 1830370
Query 196019 TTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCTCTTCGTCGGCTTA 196076
||| || |||| ||||| | | | | || | || | ||||| || | ||
Sbjct 1830371 TTCACCCGCAAGACCAAGAAGG--ACCCCAGCAACGACCCCCGTGCTCTGCGAAGACTCC 1830428
Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAACAATGGTTGA 196134
| ||||| || || |||||||| || || ||||| | || || || | | ||||
Sbjct 1830429 GCACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCCAGGCCACCATTGA 1830486
Query 196135 GATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGA 196194
||| || || | ||||| || |||||| | || || |||||||| ||||| ||
Sbjct 1830487 GATCGACTCTCTCTTTGATGGTGAGGACTTCACCATGACCATCACCCGTGCTCGTTTCGA 1830546
Query 196195 AGAGTTAAACTCTGATTTGTT--TAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252
||| | ||| | | || || | | || ||||||| || || ||
Sbjct 1830547 GGAGCTCAACGCCAAGGCCTTCGCCGGCA--CCCTCGAGCCTGTTGCCCAGGTCCTCAAG 1830604
Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312
||||| || || ||| ||||| || || ||||| || || || || ||||||
Sbjct 1830605 GACGCCGCCATTGAGAAGAGCGCCGTTGACGAGATCGTCCTCGTCGGTGGTTCTACCCGT 1830664
Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372
|| || ||||| || || | || || |||||| | || | | | || |
Sbjct 1830665 ATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGACGGCAAGAAGCTCGAGAAGAGC 1830724
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431
|||||||| ||||| || || || || ||||| ||||| ||||| | ||| ||||| ||
Sbjct 1830725 ATCAACCCCGATGAGGCCGTCGCCTACGGTGCTGCCGTCCAGGCCGGTATCCTCTCCGG 1830783
>seq5
Length=3583426
Score = 105 bits (116), Expect = 9e-18
Identities = 171/242 (71%), Gaps = 3/242 (1%)
Strand=Plus/Minus
Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805
|| || ||||| || |||||||| | | | ||||| || || ||| ||| |||| ||
Sbjct 2350228 CAGCGCCAGGCCACCAAGGACGCCGGTACCATTGCCGGCCTGAACGTTCTCCGAATCGTC 2350169
Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865
|| || || || || || || || || |||||||||||||||| | | | | || |
Sbjct 2350168 AACGAGCCCACCGCCGCCGCTATCGCCTATGGTCTGGACAAGACCGACGGTG-AGCGCCA 2350110
Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925
|| |||| ||| ||||||||||||||||| |||||||| || || || || ||
Sbjct 2350109 GAT-CATTG-TCTACGATCTCGGTGGTGGTACCTTTGATGTTTCTCTCCTGTCCATCGAC 2350052
Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985
|| | ||||| || |||||| || ||||| || || || |||||||| || ||
Sbjct 2350051 AACGGCGTCTTCGAGGTCCTGGCTACCGCCGGTGACACCCACCTCGGTGGTGAGGACTTT 2349992
Query 195986 GA 195987
||
Sbjct 2349991 GA 2349990
Score = 96.9 bits (106), Expect = 5e-15
Identities = 324/505 (64%), Gaps = 6/505 (1%)
Strand=Plus/Minus
Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432
|||||||| || || || || |||| ||||| ||||||||||| | | | || || |||
Sbjct 2349604 ATCAACCCCGACGAGGCTGTCGCTTTCGGTGCCGCCGTTCAGGCCGGTGTCCTTTCTGGT 2349545
Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492
| || || | | || || | || | || || ||| | | || |||
Sbjct 2349544 GAGGAAGGTAC------CGATGACATTGTTCTCATGGACGTCAACCCCCTGACTCTCGGT 2349491
Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552
| || || | || || || ||||| || | ||| | ||||| | ||||| |||
Sbjct 2349490 ATCGAGACCACTGGCGGAGTCATGACCAAGCTCATTCCCCGCAACACCCCCATTCCCACT 2349431
Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612
||| || |||| || || | ||||||| || || | || | || || ||
Sbjct 2349430 CGCAAGAGCCAGATCTTCTCGACTGCTGCCGATAACCAGCCCGTCGTCCTGATCCAGGTC 2349371
Query 196613 TATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACG 196672
| || || || || ||| | ||||| ||| | || || || | ||||| | ||
Sbjct 2349370 TTCGAGGGTGAGCGTTCCATGACCAAGGACAACAACCTCCTGGGCAAGTTCGAGCTTACT 2349311
Query 196673 GGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCA 196732
|| ||||| | || ||| | ||||| || |||||| | || | |||||| | || ||
Sbjct 2349310 GGCATTCCCCCCGCTCCCCGCGGTGTCCCCCAGATTGAGGTGTCCTTCGAGTTGGATGCC 2349251
Query 196733 AATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTG 196792
|| || || || || ||| | ||| | ||||||| | ||||| || ||
Sbjct 2349250 AACGGTATCCTCAAGGTCTCTGCTCACGACAAGGGCACCGGCAAGCAGGAGTCCATCACC 2349191
Query 196793 ATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCG 196852
|| ||||| |||||||| || || | ||||||||||||| || |||||| || ||
Sbjct 2349190 ATCACCAACGACAAGGGCCGTCTCACCCAGGAGGAAATTGACCGCATGGTTGCCGAGGCC 2349131
Query 196853 GAAAAGTACAGGGAAGAAGACGAGG 196877
|| |||| | || || ||| |||
Sbjct 2349130 GAGAAGTTCGCCGAGGAGGACAAGG 2349106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657862293097360
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