Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3 242 5e-59 seq2 199 5e-46 seq4 131 2e-25 seq5 105 9e-18 >seq3 Length=4316785 Score = 242 bits (268), Expect = 5e-59 Identities = 468/684 (68%), Gaps = 5/684 (1%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG-TGTAGA 195363 |||||||| || || ||||| |||||||| || ||| | | | | || || ||| || Sbjct 1322608 GGTATCGACTTGGGTACTACCTACTCATGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 1322550 Query 195364 GATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAA 195423 || ||| | || ||||| || ||||| || || || |||| ||||||||| || || | Sbjct 1322549 TATCATCGCCAACGACCAGGGTAACCGAACGACGCCCTCGTTCGTTGCCTTCACCGACAC 1322490 Query 195424 TGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGT 195483 || ||||| |||| |||||||| || || ||| || |||||||| || || || Sbjct 1322489 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 1322430 Query 195484 CTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATAT 195543 ||| ||||| ||||| | ||||| |||||||| | || | ||||| | ||| || Sbjct 1322429 CTTCGACGCCAAGCGGTTGATTGGCCGCAAGTTCGCCGACCCTGAGGTCCAGGCCGACAT 1322370 Query 195544 AAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGA 195603 ||| ||| | | | ||| | || | || ||||| | || | ||||| Sbjct 1322369 GAAGCACTTCCCCT-TCAAGGTCATCGACAAGAA-CTCC-AAGCCCGTTATCGAGGTTGA 1322313 Query 195604 ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAA 195663 || | || |||||||| || | ||||| || || || || ||||| ||| || Sbjct 1322312 GTTCAAGGGCGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGGTCCTGACCAA 1322253 Query 195664 GATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGT 195723 |||| ||||| || || | | | | |||| ||||| || | || || | ||||| Sbjct 1322252 GATGCGTGAGACCGCCGAGGCCTACCTTGGTACCACTGTCAACAACGCCGTCATCACTGT 1322193 Query 195724 ACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGG 195783 || || ||||||| || || || ||||| || |||||||| | | ||||| || Sbjct 1322192 CCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTGCCGG 1322133 Query 195784 TCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGA 195843 ||| ||| || | || ||||| || || || || ||||| || || || || || || Sbjct 1322132 TCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATCGCCTACGGCCTTGA 1322073 Query 195844 CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGA 195903 |||||| || | || || || | ||||| ||||||||||||||||| || || Sbjct 1322072 CAAGAAGGTCGAGGGCGAGCGCAACGTGCTCATCTTCGATCTCGGTGGTGGTACCTTCGA 1322013 Query 195904 TGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATAC 195963 ||| || || || | ||||| | ||||| ||||| || ||| | ||||| ||||| || Sbjct 1322012 TGTGTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTGACAC 1321953 Query 195964 TCATCTAGGTGGTGAAGATTTCGA 195987 ||| | |||||||| || ||||| Sbjct 1321952 TCACTTGGGTGGTGAGGACTTCGA 1321929 Score = 116 bits (128), Expect = 5e-21 Identities = 221/326 (68%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||||||| || | | | ||| || | || || | || || || ||| Sbjct 2542124 AAGATGAAGGAGACTGCCGAGGCCTACCTGGCCAAGCCCGTCAAGAACGCCGTCGTCACT 2542183 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || |||||||||| ||| | || || ||| || |||||||||| | ||||| Sbjct 2542184 GTCCCCGCTTACTTCAACGATGCCCAGCGTCAGAGCACCAAGGACGCTGGTCAGATTGCC 2542243 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| ||| ||| | | |||| || || || || || || |||| ||||||||| Sbjct 2542244 GGTCTTAACGTTCTCCGTGTCGTCAACGAGCCCACTGCTGCCGCTCTTGCCTATGGTCTG 2542303 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 | | ||||| | || || ||| ||||||||||||||||| || Sbjct 2542304 G------AGAAGGAGGCTGACCGCGTGGTCGCCGTCTACGATCTCGGTGGTGGTACTTTC 2542357 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||| ||||| |||| | || | ||| | ||||| || ||| | || ||||| Sbjct 2542358 GATATCTCAATTCTTGAGATCCAGAACGGTGTCTTCGAGGTCAAGTCCACCAACGGTGAC 2542417 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || |||||||| |||||||| Sbjct 2542418 ACCCACCTCGGTGGTGAGGATTTCGA 2542443 >seq2 Length=5759010 Score = 199 bits (220), Expect = 5e-46 Identities = 181/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||||||||| |||||||| Sbjct 4160784 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 4160725 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || |||||||||| || ||||| |||||||| || || ||| Sbjct 4160724 GACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 4160665 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || ||||| || ||||| || ||||| ||||||||| | || |||||| Sbjct 4160664 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAAC 4160605 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || ||||||||||| || |||||||| || | ||||| |||||| Sbjct 4160604 ATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGCCTTCGCGGTGGT 4160557 Score = 178 bits (196), Expect = 2e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || ||||| || || || || || || |||||||||||||| || ||||| ||||| Sbjct 4160486 GTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTTGAGTCCTCTGACACCATCGAC 4160427 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| |||||||| || || ||||| || || || Sbjct 4160426 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATC 4160367 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 |||||||| || |||||||| || || || |||||| |||| |||||| | || |||||| Sbjct 4160366 TTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATCCAGAAGGAG 4160307 Query 172054 TCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || ||||| || || | ||||| |||||| Sbjct 4160306 TCCACACTCCACCTCGTCCTCCGCCTTCGCGGTGGT 4160271 Score = 159 bits (176), Expect = 5e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || ||||| || ||||| ||||||||||| ||||| || | Sbjct 4160275 GTGGTATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAAT 4160216 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || ||||| ||| |||| ||||||| || || || || || ||||| || | Sbjct 4160215 CATCCGATACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGG 4160156 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | ||||| || || ||||| |||||||| ||||| ||||| || || || || || | Sbjct 4160155 ACCAGCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACT 4160096 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| |||| |||||| || || ||| | || || | || || |||||| Sbjct 4160095 ACAACATTCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGTCTCCGTGGTGGT 4160043 >seq4 Length=3617723 Score = 131 bits (144), Expect = 2e-25 Identities = 502/779 (64%), Gaps = 17/779 (2%) Strand=Plus/Plus Query 195663 AGATGAAGGAGACTGCGGAA-TCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||| ||| || || | ||| | || ||| | | || || | || Sbjct 1830012 AGATGAAGGAGATTGCCGAGGTCAAGCTTGGCAAGAAGGTTGAGA-AGGCTGTCATCACC 1830070 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || ||||| ||||||| || || || ||||| || ||||| |||| ||| ||||| Sbjct 1830071 GTCCCTGCCTACTTCAACGACAACCAGCGTCAGGCTACCAAGGATGCTGGTGCCATTGCT 1830130 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| || | || ||||| || || || || ||||| || || || ||||| Sbjct 1830131 GGCCTCAACGTCCTCCGTATCATCAACGAGCCCACTGCTGCTGCCATCGCCTACGGTCTT 1830190 Query 195842 GACAAGAACAAG---GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 | |||| ||| | || || || |||||| ||||| ||||||||||| Sbjct 1830191 GGTGCCGGCAAGACTGACAAGGAGCGCAACGTCCTGATCTACGATCTGGGTGGTGGTACC 1830250 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 || |||||||| || || || || | || ||| | ||| || |||||||| |||||| Sbjct 1830251 TTCGATGTCTCCCTGCTGAACATCCAGGGCGGTGTCTTCACCGTCAAGGCTACCGCTGGT 1830310 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATGAG 196018 || || || | ||||| | || ||||| | || ||| || | | ||| Sbjct 1830311 GACACCCACTTGGGTGGCCAGGACTTCGACACCAACCTGCTCGACCACTGCAAGAAGGAG 1830370 Query 196019 TTCCGTCGAAAGAATAAGAAAGATATTTCTGGAA--ATCCTAGGGCTCTTCGTCGGCTTA 196076 ||| || |||| ||||| | | | | || | || | ||||| || | || Sbjct 1830371 TTCACCCGCAAGACCAAGAAGG--ACCCCAGCAACGACCCCCGTGCTCTGCGAAGACTCC 1830428 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACG--GCTCAAACAATGGTTGA 196134 | ||||| || || |||||||| || || ||||| | || || || | | |||| Sbjct 1830429 GCACTGCTTGCGAGCGTGCCAAGCGTACCCTCTC--CAGCGGTGCCCAGGCCACCATTGA 1830486 Query 196135 GATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGA 196194 ||| || || | ||||| || |||||| | || || |||||||| ||||| || Sbjct 1830487 GATCGACTCTCTCTTTGATGGTGAGGACTTCACCATGACCATCACCCGTGCTCGTTTCGA 1830546 Query 196195 AGAGTTAAACTCTGATTTGTT--TAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 ||| | ||| | | || || | | || ||||||| || || || Sbjct 1830547 GGAGCTCAACGCCAAGGCCTTCGCCGGCA--CCCTCGAGCCTGTTGCCCAGGTCCTCAAG 1830604 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||||| || || ||| ||||| || || ||||| || || || || |||||| Sbjct 1830605 GACGCCGCCATTGAGAAGAGCGCCGTTGACGAGATCGTCCTCGTCGGTGGTTCTACCCGT 1830664 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || || ||||| || || | || || |||||| | || | | | || | Sbjct 1830665 ATCCCCAAGATCCAGAAGCTTCTGTCCGAGTTCTTCGACGGCAAGAAGCTCGAGAAGAGC 1830724 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGG 196431 |||||||| ||||| || || || || ||||| ||||| ||||| | ||| ||||| || Sbjct 1830725 ATCAACCCCGATGAGGCCGTCGCCTACGGTGCTGCCGTCCAGGCCGGTATCCTCTCCGG 1830783 >seq5 Length=3583426 Score = 105 bits (116), Expect = 9e-18 Identities = 171/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 195746 CAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATC 195805 || || ||||| || |||||||| | | | ||||| || || ||| ||| |||| || Sbjct 2350228 CAGCGCCAGGCCACCAAGGACGCCGGTACCATTGCCGGCCTGAACGTTCTCCGAATCGTC 2350169 Query 195806 AATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAA 195865 || || || || || || || || || |||||||||||||||| | | | | || | Sbjct 2350168 AACGAGCCCACCGCCGCCGCTATCGCCTATGGTCTGGACAAGACCGACGGTG-AGCGCCA 2350110 Query 195866 AATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAA 195925 || |||| ||| ||||||||||||||||| |||||||| || || || || || Sbjct 2350109 GAT-CATTG-TCTACGATCTCGGTGGTGGTACCTTTGATGTTTCTCTCCTGTCCATCGAC 2350052 Query 195926 GGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTC 195985 || | ||||| || |||||| || ||||| || || || |||||||| || || Sbjct 2350051 AACGGCGTCTTCGAGGTCCTGGCTACCGCCGGTGACACCCACCTCGGTGGTGAGGACTTT 2349992 Query 195986 GA 195987 || Sbjct 2349991 GA 2349990 Score = 96.9 bits (106), Expect = 5e-15 Identities = 324/505 (64%), Gaps = 6/505 (1%) Strand=Plus/Minus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 |||||||| || || || || |||| ||||| ||||||||||| | | | || || ||| Sbjct 2349604 ATCAACCCCGACGAGGCTGTCGCTTTCGGTGCCGCCGTTCAGGCCGGTGTCCTTTCTGGT 2349545 Query 196433 GTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGT 196492 | || || | | || || | || | || || ||| | | || ||| Sbjct 2349544 GAGGAAGGTAC------CGATGACATTGTTCTCATGGACGTCAACCCCCTGACTCTCGGT 2349491 Query 196493 CTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACT 196552 | || || | || || || ||||| || | ||| | ||||| | ||||| ||| Sbjct 2349490 ATCGAGACCACTGGCGGAGTCATGACCAAGCTCATTCCCCGCAACACCCCCATTCCCACT 2349431 Query 196553 AAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTA 196612 ||| || |||| || || | ||||||| || || | || | || || || Sbjct 2349430 CGCAAGAGCCAGATCTTCTCGACTGCTGCCGATAACCAGCCCGTCGTCCTGATCCAGGTC 2349371 Query 196613 TATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACG 196672 | || || || || ||| | ||||| ||| | || || || | ||||| | || Sbjct 2349370 TTCGAGGGTGAGCGTTCCATGACCAAGGACAACAACCTCCTGGGCAAGTTCGAGCTTACT 2349311 Query 196673 GGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCA 196732 || ||||| | || ||| | ||||| || |||||| | || | |||||| | || || Sbjct 2349310 GGCATTCCCCCCGCTCCCCGCGGTGTCCCCCAGATTGAGGTGTCCTTCGAGTTGGATGCC 2349251 Query 196733 AATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTG 196792 || || || || || ||| | ||| | ||||||| | ||||| || || Sbjct 2349250 AACGGTATCCTCAAGGTCTCTGCTCACGACAAGGGCACCGGCAAGCAGGAGTCCATCACC 2349191 Query 196793 ATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCG 196852 || ||||| |||||||| || || | ||||||||||||| || |||||| || || Sbjct 2349190 ATCACCAACGACAAGGGCCGTCTCACCCAGGAGGAAATTGACCGCATGGTTGCCGAGGCC 2349131 Query 196853 GAAAAGTACAGGGAAGAAGACGAGG 196877 || |||| | || || ||| ||| Sbjct 2349130 GAGAAGTTCGCCGAGGAGGACAAGG 2349106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862293097360