Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 125 2e-23 seq7 122 3e-22 >seq4 Length=3617723 Score = 125 bits (138), Expect = 2e-23 Identities = 191/272 (70%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| | ||| || ||||| ||||| || || || || || || Sbjct 1843207 TCTTCCAGAGCCTTGACCAGACGTCGTTGAATGTAACCTGTCTCAGCGGTCTTGACGGCC 1843148 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| |||||||| |||| || |||||||| | ||| ||| || Sbjct 1843147 GTATCAATGAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAACTCGGTCGGGGTGAGG 1843088 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | | | | ||| |||| || || ||||| || ||||| || | ||| |||||| Sbjct 1843087 CCACGCAGATATGAGTTCTCCACAAAGCCACGGGCTTCGGGTGAGTAATCGTCCTTGGTG 1843028 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || ||||| || | | | |||| | || ||||||||||| || || ||||| Sbjct 1843027 AAATGGGGCAGAGTTCGATATTTGAAGCCAAACGGAATACGCTTTCCTTCGACAATCTGC 1842968 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||||| | || ||||||| ||||| || Sbjct 1842967 TGTCCCACGAGCGCCGTCATCTGAGAAATGTT 1842936 Score = 102 bits (112), Expect = 2e-16 Identities = 114/150 (76%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || ||||| ||||||||| ||||| || ||||| |||||||||||||| || | || Sbjct 2167299 TGAGCGATTGTCATACGAGATGGAATGGCGTGGGGGTTGATGATGATGTCTGGCGTGAGG 2167358 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || ||||| ||||| |||| || | | ||| || |||||||| ||||| || Sbjct 2167359 CCTTCTCTTGTGAACGGCATGTCCTCTTGC-CGGTAAGTGACACCAATAGTGCCCTTCTG 2167417 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||| |||||| ||||| || Sbjct 2167418 TCCGTGACGAGAGGCGAACTTGTCACCGAT 2167447 Score = 84.2 bits (92), Expect = 6e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||||| |||||| ||||||||||||||||| ||||| || |||||||| || || Sbjct 2166945 GCACCGTGTGCAATCATGCAATCACGCTCCATTTCTCCGAATCGCAGACCACCGTCTCGG 2167004 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGT 251570 || | ||| || | ||||| || || Sbjct 2167005 GCACGACCTTCCACCGGCTGTCGTGT 2167030 >seq7 Length=2761852 Score = 122 bits (134), Expect = 3e-22 Identities = 243/355 (68%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364 |||| || || ||| || || | ||||| |||||| || || || || || | Sbjct 1551020 CCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATACACTCCGAGACGT 1551079 Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423 | || || || || ||||||||||| || | |||| ||| | | || |||||| Sbjct 1551080 ACTCGCTGCTCATCGACACTTACATCAAGGAGCACAGCCAGC-GCAGCTACCTCTTCAAC 1551138 Query 133424 GCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482 || ||| | || ||||||| || ||||| ||||||||||||| ||||||||| Sbjct 1551139 GCGATT-GAGACCATTCCTTGCATCCGCAAGAAGGCTGACTGGGCTATCCGATGGATCCA 1551197 Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542 ||||||| | ||||| || || ||||| ||||| | || ||||| || || Sbjct 1551198 GGACAAGAACTCCTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTT 1551257 Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602 ||||| ||||| || ||| || || ||||| || ||||| ||| | | || || || Sbjct 1551258 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGGGGTCTCATGCCCGGCCT 1551317 Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | ||||| ||||| || || || | ||||||| || ||||| || |||||| Sbjct 1551318 GACCTTTTCCAACGAGCTCATCTCGCGTGACGAGGGTCTGCACACGGACTTTGCC 1551372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817354850381