Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4 125 2e-23
seq7 122 3e-22
>seq4
Length=3617723
Score = 125 bits (138), Expect = 2e-23
Identities = 191/272 (70%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||||| | ||||| | ||| || ||||| ||||| || || || || || ||
Sbjct 1843207 TCTTCCAGAGCCTTGACCAGACGTCGTTGAATGTAACCTGTCTCAGCGGTCTTGACGGCC 1843148
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691
|||||||| ||||| |||||||| |||| || |||||||| | ||| ||| ||
Sbjct 1843147 GTATCAATGAGACCCTCACGACCAGCCATGGCGTGGAAGAAGAACTCGGTCGGGGTGAGG 1843088
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751
|| | | | | ||| |||| || || ||||| || ||||| || | ||| ||||||
Sbjct 1843087 CCACGCAGATATGAGTTCTCCACAAAGCCACGGGCTTCGGGTGAGTAATCGTCCTTGGTG 1843028
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| || ||||| || | | | |||| | || ||||||||||| || || |||||
Sbjct 1843027 AAATGGGGCAGAGTTCGATATTTGAAGCCAAACGGAATACGCTTTCCTTCGACAATCTGC 1842968
Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
||||||| | || ||||||| ||||| ||
Sbjct 1842967 TGTCCCACGAGCGCCGTCATCTGAGAAATGTT 1842936
Score = 102 bits (112), Expect = 2e-16
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| ||||| ||||||||| ||||| || ||||| |||||||||||||| || | ||
Sbjct 2167299 TGAGCGATTGTCATACGAGATGGAATGGCGTGGGGGTTGATGATGATGTCTGGCGTGAGG 2167358
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957
|| || ||||| ||||| |||| || | | ||| || |||||||| ||||| ||
Sbjct 2167359 CCTTCTCTTGTGAACGGCATGTCCTCTTGC-CGGTAAGTGACACCAATAGTGCCCTTCTG 2167417
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
|||||||||||| |||||| ||||| ||
Sbjct 2167418 TCCGTGACGAGAGGCGAACTTGTCACCGAT 2167447
Score = 84.2 bits (92), Expect = 6e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544
|||||||||| |||||| ||||||||||||||||| ||||| || |||||||| || ||
Sbjct 2166945 GCACCGTGTGCAATCATGCAATCACGCTCCATTTCTCCGAATCGCAGACCACCGTCTCGG 2167004
Query 251545 GCCCTACCCTCGGCAGGCTGACGAGT 251570
|| | ||| || | ||||| || ||
Sbjct 2167005 GCACGACCTTCCACCGGCTGTCGTGT 2167030
>seq7
Length=2761852
Score = 122 bits (134), Expect = 3e-22
Identities = 243/355 (68%), Gaps = 4/355 (1%)
Strand=Plus/Plus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| || || ||| || || | ||||| |||||| || || || || || |
Sbjct 1551020 CCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATACACTCCGAGACGT 1551079
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCA-CAAACTATTCAAC 133423
| || || || || ||||||||||| || | |||| ||| | | || ||||||
Sbjct 1551080 ACTCGCTGCTCATCGACACTTACATCAAGGAGCACAGCCAGC-GCAGCTACCTCTTCAAC 1551138
Query 133424 GCCATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482
|| ||| | || ||||||| || ||||| ||||||||||||| |||||||||
Sbjct 1551139 GCGATT-GAGACCATTCCTTGCATCCGCAAGAAGGCTGACTGGGCTATCCGATGGATCCA 1551197
Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542
||||||| | ||||| || || ||||| ||||| | || ||||| || ||
Sbjct 1551198 GGACAAGAACTCCTCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTT 1551257
Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602
||||| ||||| || ||| || || ||||| || ||||| ||| | | || || ||
Sbjct 1551258 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGGGGTCTCATGCCCGGCCT 1551317
Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
| ||||| ||||| || || || | ||||||| || ||||| || ||||||
Sbjct 1551318 GACCTTTTCCAACGAGCTCATCTCGCGTGACGAGGGTCTGCACACGGACTTTGCC 1551372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817354850381
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |