Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq7 219 4e-52 seq2 95.1 1e-14 >seq7 Length=2761852 Score = 219 bits (242), Expect = 4e-52 Identities = 1069/1675 (64%), Gaps = 58/1675 (3%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCA-ATATTTTG 138416 |||||||| ||||||||||| ||| | || | | ||| ||||| || || || Sbjct 709308 ATCTCCCAGACGGTCTTGTACAGAGCCTTGATGTC-CTCGGGGATGTTGGGGATGTTCTG 709366 Query 138417 AATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTT 138476 ||| ||||| | ||||||||||| || ||||| | ||| |||| | Sbjct 709367 GATGGAGCCGTTCTCGGCAATGATGCGGTTCTTCATGGCGTCGGACCACAGGCCGGTGTC 709426 Query 138477 GATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACG 138536 || || ||| || | || | ||| | ||||| || ||||| || | || || || Sbjct 709427 GACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACTCACCAGCAAGGACACGTCG 709486 Query 138537 AACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGT 138596 ||| |||||| ||| | ||||| || |||||||||| ||||| ||||||| || Sbjct 709487 CTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAAGT 709546 Query 138597 GGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCG 138656 | | || || |||||| || || | | || || | |||||| |||||| | Sbjct 709547 GCTGGCAGTGGGCATGGGAGCGACGAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTG 709606 Query 138657 TTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 |||||||| || ||| ||||||| ||| || || || |||||| || ||||| Sbjct 709607 CTCCTTGAGGGAGTCCCACTCCCACAGGTCGGAGGGCTTGACGTCCCACATGTCATACTG 709666 Query 138717 TAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAA-ACTCTTGCG 138775 | || ||| | |||||| || | | |||| ||||| || | ||||| | Sbjct 709667 CAGGATGCCCTCAGATGCGGGTGATCCCTTGAACGATTCGTACGGGCCCTCAATCTTG-G 709725 Query 138776 CCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835 | | ||| || ||||| || || ||| |||||| || ||| ||||||| || | Sbjct 709726 CAATCTCCATGGAAGCCTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCA 709785 Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTG-AACGCGTCGGCCAGC 138894 || || ||||| | ||| | |||| || || | || | |||||||| || || Sbjct 709786 GCTCGCGAGCCTCAGGAGACTCAAAGGGCAGACGCAG-AGCGAGGAACGCGTCAGCAAGA 709844 Query 138895 CCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGG----CTTC 138950 || || || || || || | ||| || ||||||| || ||| |||||| | | Sbjct 709845 CCCTGAACACCGACACCAATAGGTCGGTGGCGCATGTT----GCTGTTGCGGGCCTCCTG 709900 Query 138951 GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGT 139010 || ||| |||| ||| ||||| ||||| ||| | || || ||||||||||| || | Sbjct 709901 GACAGGGTAATGGTTCACATCAATGATGCGGTTGAGGTTACGGACGACCACCTTGGT-GA 709959 Query 139011 ATGCTTTAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATT 139069 | | | || | | | || ||||| || |||||| |||||||| | || | Sbjct 709960 CTTCGTGAAGCTTCTTGAAGTCGTAGCATCCTTCGTTGTAGTCGACGAAGGCGGGGA--- 710016 Query 139070 TGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGA 139129 | || | ||||| | |||||| || || || || |||||| | | ||| |||| Sbjct 710017 --GGGCCAGA----GAGGCCAAGTTGCAGACAGCAACCTCATCGGGGGCACAGTACTCGA 710070 Query 139130 CAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTC 139189 || || | || | ||| | ||| || || | || | || ||||| || | Sbjct 710071 TGATCTCAGTGCAGAGGTTAGAGCTGCGGATAGTTCCCAGGTTCTTCTGGTTGCTCTTGC 710130 Query 139190 GGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAA 139249 |||| || ||| ||||| ||||| | || | || || || || | ||| | | Sbjct 710131 GGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCGGTCTGAGCCTCCAGGA 710190 Query 139250 TGAATTTGAACAAGTCCCTAGCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCG 139305 || | | ||| | | ||| | || ||| || | | || | |||| |||| Sbjct 710191 TGGAGTACCACAGCTTCTGAGCGCGGATGGTCTTG-CG---GCCACGTCCCTCGCTCTCG 710246 Query 139306 TACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTG 139365 ||||||||||| || | || || || |||||| ||||| ||| | | || | | Sbjct 710247 TACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGCAAGGCCAGGGCATTCG 710306 Query 139366 TCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGA 139425 | || |||||||||| ||| | |||| || ||| ||| ||||||| ||||| ||| Sbjct 710307 TTGGGGCACATGAGCGTCCAGTCCAGGTTCTTCTCGACACGCTTCATGAAGAGATCGGGA 710366 Query 139426 ATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTC 139485 ||||||| || | | || ||||| || || ||| ||| ||| || | Sbjct 710367 ATCCACAGGGCAAGGAACAGGTCGCGAGCGCGAACCTCCTCCTTACCGTGGTT--CTTGC 710424 Query 139486 --ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGC 139543 | | |||||| ||||| ||||| |||||||| || || || |||||||| | || | Sbjct 710425 GGAGATCAAGGAAGTCAAAGACGTCGGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCAC 710484 Query 139544 CTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACA 139600 | || ||||| || || ||||||| ||| ||| || ||||| || |||| || Sbjct 710485 CAGGACGCTTGTTGCCGCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACTCGCAGCA 710544 Query 139601 TCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATG--GGA-CTGTTGCGAGC 139655 | || | ||| | | || |||||||||| ||| ||| ||| | | || || Sbjct 710545 TGGGGATAATGCCGTTGGAGGTGCCGTTGGTGC--CGGCAATGTAGGAGCCGGTG---GC 710599 Query 139656 TCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATC 139715 |||| | || || || | || || || || | | ||||| || | ||| | Sbjct 710600 ACGGATGCGGTGGACGTTCAAACCAATACCACCAGCCATCTTGGAGAT--CATGGCACAC 710657 Query 139716 GCGT--AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCAT 139773 | | | || ||||| ||||| ||||||||||||| ||| |||||| |||||| Sbjct 710658 GTCTTCAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGTCGACCAGGAAGCAT 710717 Query 139774 GACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC 139833 || || || || | | | || || || || || || || || || ||||| Sbjct 710718 GAGGACAGCTGGGCTTGCGGGGTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAG 710777 Query 139834 ATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATA 139893 | | | ||||| | | ||| || |||| | | | |||| || ||| ||| Sbjct 710778 AACTTGCTGGACATGAGGTGGTATGTCTCGAGAACACGCTCAATGTCGTCTCCCCAGATG 710837 Query 139894 CCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttttt 139953 || || | |||||||| | ||| || || ||| ||| | | | ||| |||| || Sbjct 710838 CCAACGGCCACTCGCATGATCATGTGCTGTGGCCGCTCGACAATCTTGCCGTCGAGCTTG 710897 Query 139954 ttCAG--ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || | || ||| || |||||| |||||||||| |||||||| || Sbjct 710898 AGGAGGTATGATCG--CTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTC 710950 >seq2 Length=5759010 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 4160784 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 4160725 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 4160724 GACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAG 4160665 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| || || || ||||| |||||| | | | | ||||| || ||| Sbjct 4160664 CAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAAC 4160605 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | || | || | ||||| || Sbjct 4160604 ATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGCCTTCGCGGTGG 4160558 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || || || || || || || | | Sbjct 3574377 GATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 3574436 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 3574437 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 3574496 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||||||||| || ||||| |||||| | | | || || || || Sbjct 3574497 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 3574556 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || ||| |||| |||| |||| || || Sbjct 3574557 CATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 3574604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897526891640