Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq7 185 1e-40 seq6 138 2e-26 seq2 116 6e-20 >seq7 Length=2761852 Score = 185 bits (204), Expect = 1e-40 Identities = 344/507 (68%), Gaps = 21/507 (4%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| || || || |||| ||| ||||| || |||||||| | || |||||| Sbjct 710501 GCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTT 710560 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 ||| |||||||||||| || | ||||| ||| | ||| || | ||| || || Sbjct 710561 GGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAA 710620 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 || || || || ||| ||||||||| | || ||| | ||||| || |||||||| || Sbjct 710621 ACCAATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCGTAGATACC 710680 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| || |||| |||||||||| | ||| ||||| || || || | ||| || Sbjct 710681 CTCAATGCTGTCGTCCTTCATGTCGACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGT 710740 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836 || ||||||||||| ||||| | || ||| | ||| ||||||| | ||| Sbjct 710741 ACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTGGTA 710800 Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896 || |||| || ||| | | ||||| || || ||| | ||| Sbjct 710801 TGTCTCGAGAACACGCTCAATGTCGTCT---------------CCCCAGATGCCAACGGC 710845 Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAG 2073953 || ||||||||||||| ||| || |||||||| | | ||||| | |||| || Sbjct 710846 CACTCGCATGATCATGTGCTGTGGCCGCTCGACAATCTTGCCGTCG---AGCTTGAGGAG 710902 Query 2073954 GTAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCG 2074013 ||| || || ||| ||| | ||||||||| |||| | ||| || |||| | Sbjct 710903 GTATGATCGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGAC 710962 Query 2074014 GATGGCGGCGTCGAGGGCCTCCTTGTG 2074040 |||||||| |||||| |||||||||| Sbjct 710963 GATGGCGGAGTCGAGCTCCTCCTTGTG 710989 Score = 159 bits (176), Expect = 5e-33 Identities = 240/335 (72%), Gaps = 17/335 (5%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| || ||| | |||||| |||| |||||||||||||| || ||||| Sbjct 1551354 ACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCCCGCTT 1551295 Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456 ||||||||| ||||| |||| || || || ||| ||||| |||||||||||||| Sbjct 1551294 CTTGAGCCAGAAGATGGAGGCAAAGGCACCGC---TGAAGAAGATACCCTCGACGGCGGC 1551238 Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT--TTGTTGATCCACTTCATC 794514 |||| | || || |||| |||||| | ||| ||| | | |||||| || Sbjct 1551237 AAAGGCAACCAGGCGCTGGGCAAAGG-----AGGAGTTCTTGTCCTGGATCCATCGGATA 1551183 Query 794515 GCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 794574 ||||| || ||||| || | | | || | || || || ||| ||||||| | | Sbjct 1551182 GCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAGAGGTAG--C 1551125 Query 794575 TTCTC-GACCG-GGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGA 794632 | | | | | | | ||||||| ||| ||||||||||| |||||||| ||||| ||||| | Sbjct 1551124 TGCGCTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGTA 1551065 Query 794633 TGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 |||| || || |||||||||||| || |||||| Sbjct 1551064 TGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAG 1551030 Score = 129 bits (142), Expect = 9e-24 Identities = 181/252 (72%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | |||||| ||| || |||||||||||||| | | Sbjct 1551676 TGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 1551617 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | || ||||||| || | ||| ||||||| |||| Sbjct 1551616 GGGAGATGTTCTCCATAAAGTCAAAGGGGTTGGACGACTTGTACACCTTCTCGTTGCCGA 1551557 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | |||||||||||||| || |||||||||||||| ||| ||| || ||||| Sbjct 1551556 GAGCGACCAGCAGGCGGTCGGCAACAAATTCAATGTACTGCTTCATCAGGTTGGAGTTCA 1551497 Query 794071 TGCC--GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||| | |||||| | ||||| | |||| | | ||||| | |||||| |||||| Sbjct 1551496 TGCCCAGCAGAGCGCAA--GGCAGGGCCTCGGTCAGGAACTCCTGCTCGATGCGGACGGC 1551439 Query 794129 CTCGATGATGAT 794140 ||| ||||||| Sbjct 1551438 GTCGGTGATGAT 1551427 Score = 114 bits (126), Expect = 2e-19 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 118618 TCTTGCGCACGCCGCGCATGCACACGCACATGTGGAGGCCCTCGAGCACGACGCCGACGC 118677 |||| ||||||||||||| || ||||| |||| | ||| | || ||| |||||| Sbjct 51454 TCTTTTGCACGCCGCGCATCACCATGCACAGGTGGCTGGACTCTATGACCACGGCGACGC 51395 Query 118678 CGCGCGCGCCCGTGACCTCGCTGATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCA 118737 | | | | | ||| ||| |||| | |||||| | ||| || |||||| | Sbjct 51394 CCTGGGGCCGCAGGACGTCGAAGATGGCGTTGGCGATTTCTTTCGTAAGGCGCTCCTGGA 51335 Query 118738 CCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCC 118797 ||| | |||| |||| ||||||| | |||||||| | |||| | |||||||| Sbjct 51334 TCTGCAGGCGGCGGGAGAACATGTCGGCAATGCGCGGCAGCTTGGAGATGCCGATGACGG 51275 Query 118798 TGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGC 118857 | ||| | |||||| | |||| |||||||| | ||||| | ||| |||||||||| Sbjct 51274 CGTTGTTGGGGATGTAGCCGATGTGCACCTTGCCGGTGAAGGGTACCAGGTGGTGCTCGC 51215 Query 118858 ACATGGAGAAAAAGTCAATGT 118878 | | |||||| | |||||||| Sbjct 51214 AGAGGGAGAAGATGTCAATGT 51194 Score = 111 bits (122), Expect = 2e-18 Identities = 152/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| | |||||||| ||||||| || |||||||||| ||||||||| Sbjct 1551026 GCCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACGATGCCG 1550967 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-G 796268 || ||||||||| ||||| |||| ||| ||| |||| |||||| ||| | | | Sbjct 1550966 TCCGAGGCGGCGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGG 1550907 Query 796269 CG--AGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 || | ||||| | | ||| | ||||| | ||||||||| ||||| ||||| Sbjct 1550906 CGGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGAA 1550847 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||||||||| |||||||| | ||| ||| Sbjct 1550846 GCCTCGGCCTTCTTGTACATTTGCCAGATC 1550817 Score = 95.1 bits (104), Expect = 2e-13 Identities = 263/406 (65%), Gaps = 10/406 (2%) Strand=Plus/Plus Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671 || |||||||||| ||||||||| | ||||| | ||||||| |||||| |||| Sbjct 710103 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGG 710162 Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAA--TTTGGCGCGCGGGCACCG 2071729 ||| |||||| |||| ||| | ||||| |||| | || | |||||| Sbjct 710163 TTACCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGGAT---- 710218 Query 2071730 AGGTCCT-CG--CGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGC 2071786 |||| | || | || |||| | || || ||||| | ||| Sbjct 710219 -GGTCTTGCGGCCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGC 710277 Query 2071787 CGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAG 2071846 ||| ||| || ||||| || ||| ||||| | ||||| |||||| | Sbjct 710278 CGTAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAGGTTCT 710337 Query 2071847 TCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCC 2071906 || | || || ||| || || ||| |||||||| | || || ||||| || | Sbjct 710338 TCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGCGC 710397 Query 2071907 GGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCC 2071966 | ||||||||| ||||||||||| || || || |||| | || ||||||||||| Sbjct 710398 GAACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGTGCC 710457 Query 2071967 ACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 | ||||| |||||| ||||||||| || |||||| |||||| Sbjct 710458 AGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCGCC 710503 >seq6 Length=3082172 Score = 138 bits (152), Expect = 2e-26 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| |||||| ||| || ||||||||||||||||| | || |||||||||||||||||| Sbjct 2666876 GCCTCCAACTTCCTGGATATCAAGCCCCTCCTCGACGTTGGCTGCAAGACCGTGGCCAAC 2666817 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 2666816 ATGATCAAGGGCAAGTCACCCGAGGAGATCCGCAAGACCTTCAACATCA 2666768 Score = 107 bits (118), Expect = 3e-17 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 2233091 GTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCGT-CAGACGAGGC 2233149 |||||||| ||||| || |||||||| ||||||||||| ||||| || ||| || || Sbjct 2120890 GTCGCCTTCCCCACGGAAACCGTCTACGGCCTCGGCGCGGACGCCACGCGCAG-CGCCGC 2120832 Query 2233150 CGTACAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGT 2233209 ||| || |||||| | ||||||||||| ||||| |||||||| ||||||||||||| Sbjct 2120831 CGTCAAGGGCATCTACGCGGCCAAGGGCCGGCCGTCGGACAACCCGCTCATCGTGCACGT 2120772 Query 2233210 GGC 2233212 || Sbjct 2120771 CGC 2120769 >seq2 Length=5759010 Score = 116 bits (128), Expect = 6e-20 Identities = 125/163 (77%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 1996592 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCGCCCGGCAG 1996651 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 |||||| || |||| ||||||||||| |||| ||| ||| |||||| || | Sbjct 1996652 GATCAGTCGGACGGACGTCTGGATCTCTCGGGAAGAGATTGTGGACTTCTTGTT-GTAGG 1996710 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 | ||||| | ||||||||| | | ||| |||| ||||| Sbjct 1996711 CGGCCAGCTTGGAAGCCTCGGTGGCAACGCGCTCGAAGATGTC 1996753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916245017130707