Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq7 185 1e-40
seq6 138 2e-26
seq2 116 6e-20
>seq7
Length=2761852
Score = 185 bits (204), Expect = 1e-40
Identities = 344/507 (68%), Gaps = 21/507 (4%)
Strand=Plus/Plus
Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596
|| ||||||||| || || || |||| ||| ||||| || |||||||| | || ||||||
Sbjct 710501 GCCCTGGTCGACGTATCGAGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTT 710560
Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656
||| |||||||||||| || | ||||| ||| | ||| || | ||| || ||
Sbjct 710561 GGAGGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAA 710620
Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716
|| || || || ||| ||||||||| | || ||| | ||||| || |||||||| ||
Sbjct 710621 ACCAATACCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCGTAGATACC 710680
Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776
||| || |||| |||||||||| | ||| ||||| || || || | ||| ||
Sbjct 710681 CTCAATGCTGTCGTCCTTCATGTCGACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGT 710740
Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTA 2073836
|| ||||||||||| ||||| | || ||| | ||| ||||||| | |||
Sbjct 710741 ACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTGGTA 710800
Query 2073837 GGTGGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGC 2073896
|| |||| || ||| | | ||||| || || ||| | |||
Sbjct 710801 TGTCTCGAGAACACGCTCAATGTCGTCT---------------CCCCAGATGCCAACGGC 710845
Query 2073897 GACGCGCATGATCATGTACTGGGGTCGCTCGACGA---CGGCGTCGCGCACCTTGGTCAG 2073953
|| ||||||||||||| ||| || |||||||| | | ||||| | |||| ||
Sbjct 710846 CACTCGCATGATCATGTGCTGTGGCCGCTCGACAATCTTGCCGTCG---AGCTTGAGGAG 710902
Query 2073954 GTAGGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCG 2074013
||| || || ||| ||| | ||||||||| |||| | ||| || |||| |
Sbjct 710903 GTATGATCGCTCCAGCGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGAC 710962
Query 2074014 GATGGCGGCGTCGAGGGCCTCCTTGTG 2074040
|||||||| |||||| ||||||||||
Sbjct 710963 GATGGCGGAGTCGAGCTCCTCCTTGTG 710989
Score = 159 bits (176), Expect = 5e-33
Identities = 240/335 (72%), Gaps = 17/335 (5%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| || ||| | |||||| |||| |||||||||||||| || |||||
Sbjct 1551354 ACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCCCGCTT 1551295
Query 794400 CTTGAGCCAAAAGAT---GGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC 794456
||||||||| ||||| |||| || || || ||| ||||| ||||||||||||||
Sbjct 1551294 CTTGAGCCAGAAGATGGAGGCAAAGGCACCGC---TGAAGAAGATACCCTCGACGGCGGC 1551238
Query 794457 AAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT--TTGTTGATCCACTTCATC 794514
|||| | || || |||| |||||| | ||| ||| | | |||||| ||
Sbjct 1551237 AAAGGCAACCAGGCGCTGGGCAAAGG-----AGGAGTTCTTGTCCTGGATCCATCGGATA 1551183
Query 794515 GCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 794574
||||| || ||||| || | | | || | || || || ||| ||||||| | |
Sbjct 1551182 GCCCAGTCAGCCTTCTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAGAGGTAG--C 1551125
Query 794575 TTCTC-GACCG-GGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGA 794632
| | | | | | | ||||||| ||| ||||||||||| |||||||| ||||| ||||| |
Sbjct 1551124 TGCGCTGGCTGTGCTCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGTA 1551065
Query 794633 TGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667
|||| || || |||||||||||| || ||||||
Sbjct 1551064 TGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAG 1551030
Score = 129 bits (142), Expect = 9e-24
Identities = 181/252 (72%), Gaps = 4/252 (2%)
Strand=Plus/Minus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||| | |||||| ||| || |||||||||||||| | |
Sbjct 1551676 TGACACCAGCCTTCTGGTAGTCGGCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCCA 1551617
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| ||||| |||||| | || ||||||| || | ||| ||||||| ||||
Sbjct 1551616 GGGAGATGTTCTCCATAAAGTCAAAGGGGTTGGACGACTTGTACACCTTCTCGTTGCCGA 1551557
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | |||||||||||||| || |||||||||||||| ||| ||| || |||||
Sbjct 1551556 GAGCGACCAGCAGGCGGTCGGCAACAAATTCAATGTACTGCTTCATCAGGTTGGAGTTCA 1551497
Query 794071 TGCC--GATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128
|||| | |||||| | ||||| | |||| | | ||||| | |||||| ||||||
Sbjct 1551496 TGCCCAGCAGAGCGCAA--GGCAGGGCCTCGGTCAGGAACTCCTGCTCGATGCGGACGGC 1551439
Query 794129 CTCGATGATGAT 794140
||| |||||||
Sbjct 1551438 GTCGGTGATGAT 1551427
Score = 114 bits (126), Expect = 2e-19
Identities = 182/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 118618 TCTTGCGCACGCCGCGCATGCACACGCACATGTGGAGGCCCTCGAGCACGACGCCGACGC 118677
|||| ||||||||||||| || ||||| |||| | ||| | || ||| ||||||
Sbjct 51454 TCTTTTGCACGCCGCGCATCACCATGCACAGGTGGCTGGACTCTATGACCACGGCGACGC 51395
Query 118678 CGCGCGCGCCCGTGACCTCGCTGATGCTCTCGGCGATCTGGCGCGTGAGCGCCTCCTGCA 118737
| | | | | ||| ||| |||| | |||||| | ||| || |||||| |
Sbjct 51394 CCTGGGGCCGCAGGACGTCGAAGATGGCGTTGGCGATTTCTTTCGTAAGGCGCTCCTGGA 51335
Query 118738 CCTGGAAGCGGTCCGAGAGCATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCC 118797
||| | |||| |||| ||||||| | |||||||| | |||| | ||||||||
Sbjct 51334 TCTGCAGGCGGCGGGAGAACATGTCGGCAATGCGCGGCAGCTTGGAGATGCCGATGACGG 51275
Query 118798 TGCCCGCGGGCAGGTAGCCCACGTGCGCCTTGCCGATAAAGGGCAGCAGATGGTGCTCGC 118857
| ||| | |||||| | |||| |||||||| | ||||| | ||| ||||||||||
Sbjct 51274 CGTTGTTGGGGATGTAGCCGATGTGCACCTTGCCGGTGAAGGGTACCAGGTGGTGCTCGC 51215
Query 118858 ACATGGAGAAAAAGTCAATGT 118878
| | |||||| | ||||||||
Sbjct 51214 AGAGGGAGAAGATGTCAATGT 51194
Score = 111 bits (122), Expect = 2e-18
Identities = 152/210 (72%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
|||||||| | |||||||| ||||||| || |||||||||| |||||||||
Sbjct 1551026 GCCTCGGGAATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACGATGCCG 1550967
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGA-G 796268
|| ||||||||| ||||| |||| ||| ||| |||| |||||| ||| | | |
Sbjct 1550966 TCCGAGGCGGCGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGG 1550907
Query 796269 CG--AGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326
|| | ||||| | | ||| | ||||| | ||||||||| ||||| |||||
Sbjct 1550906 CGGTTGTTCCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCAGAAGGAA 1550847
Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATC 796356
||||||||||| |||||||| | ||| |||
Sbjct 1550846 GCCTCGGCCTTCTTGTACATTTGCCAGATC 1550817
Score = 95.1 bits (104), Expect = 2e-13
Identities = 263/406 (65%), Gaps = 10/406 (2%)
Strand=Plus/Plus
Query 2071612 GTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGC 2071671
|| |||||||||| ||||||||| | ||||| | ||||||| |||||| ||||
Sbjct 710103 GTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGG 710162
Query 2071672 GCACCCGTCTCGATCTGCGCCGTGACGATGGCCGACCAAA--TTTGGCGCGCGGGCACCG 2071729
||| |||||| |||| ||| | ||||| |||| | || | ||||||
Sbjct 710163 TTACCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGGAT---- 710218
Query 2071730 AGGTCCT-CG--CGCGGCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGC 2071786
|||| | || | || |||| | || || ||||| | |||
Sbjct 710219 -GGTCTTGCGGCCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGC 710277
Query 2071787 CGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAG 2071846
||| ||| || ||||| || ||| ||||| | ||||| |||||| |
Sbjct 710278 CGTAGCAGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAGGTTCT 710337
Query 2071847 TCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCC 2071906
|| | || || ||| || || ||| |||||||| | || || ||||| || |
Sbjct 710338 TCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGCGC 710397
Query 2071907 GGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCC 2071966
| ||||||||| ||||||||||| || || || |||| | || |||||||||||
Sbjct 710398 GAACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGTGCC 710457
Query 2071967 ACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012
| ||||| |||||| ||||||||| || |||||| ||||||
Sbjct 710458 AGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCGCC 710503
>seq6
Length=3082172
Score = 138 bits (152), Expect = 2e-26
Identities = 96/109 (88%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706
||| |||||| ||| || ||||||||||||||||| | || ||||||||||||||||||
Sbjct 2666876 GCCTCCAACTTCCTGGATATCAAGCCCCTCCTCGACGTTGGCTGCAAGACCGTGGCCAAC 2666817
Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755
| |||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 2666816 ATGATCAAGGGCAAGTCACCCGAGGAGATCCGCAAGACCTTCAACATCA 2666768
Score = 107 bits (118), Expect = 3e-17
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 2233091 GTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCGT-CAGACGAGGC 2233149
|||||||| ||||| || |||||||| ||||||||||| ||||| || ||| || ||
Sbjct 2120890 GTCGCCTTCCCCACGGAAACCGTCTACGGCCTCGGCGCGGACGCCACGCGCAG-CGCCGC 2120832
Query 2233150 CGTACAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGT 2233209
||| || |||||| | ||||||||||| ||||| |||||||| |||||||||||||
Sbjct 2120831 CGTCAAGGGCATCTACGCGGCCAAGGGCCGGCCGTCGGACAACCCGCTCATCGTGCACGT 2120772
Query 2233210 GGC 2233212
||
Sbjct 2120771 CGC 2120769
>seq2
Length=5759010
Score = 116 bits (128), Expect = 6e-20
Identities = 125/163 (77%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||
Sbjct 1996592 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCCAGCTCGCCCGGCAG 1996651
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590
|||||| || |||| ||||||||||| |||| ||| ||| |||||| || |
Sbjct 1996652 GATCAGTCGGACGGACGTCTGGATCTCTCGGGAAGAGATTGTGGACTTCTTGTT-GTAGG 1996710
Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632
| ||||| | ||||||||| | | ||| |||| |||||
Sbjct 1996711 CGGCCAGCTTGGAAGCCTCGGTGGCAACGCGCTCGAAGATGTC 1996753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916245017130707
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