Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq2 93.3 1e-13
>seq2
Length=5759010
Score = 93.3 bits (102), Expect = 1e-13
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||| || || || ||||| | || || || || |||
Sbjct 4160781 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 4160722
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| |||||||| || || || || ||| || ||| ||
Sbjct 4160721 ACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 4160662
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || |||||||| ||||||||| | || ||||| | || | | || |||||| ||
Sbjct 4160661 CGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAACATC 4160602
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||| |||||||| |||||||||||
Sbjct 4160601 CAGAAGGAGTCTACCCTTCACCTTGT 4160576
Score = 91.5 bits (100), Expect = 3e-13
Identities = 137/195 (70%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || ||||| ||| ||||||||||| ||||| || ||||
Sbjct 4160027 AAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCTGATACCATCGACAAC 4159968
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| |||||||| || || || || || || ||| || | || || |||
Sbjct 4159967 GTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCCTGATTTTC 4159908
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || |||||| ||||||| || ||||| || ||| |||||| ||||||| |||
Sbjct 4159907 GCTGGTAAGCAGCTGGAAGACGGTCGGACTCTGAGCGACTACAACATCCAGAAGGAGAGC 4159848
Query 206365 ACTCTTCACCTTGTT 206379
||||| || || |||
Sbjct 4159847 ACTCTGCATCTGGTT 4159833
Score = 84.2 bits (92), Expect = 5e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| || ||||||||||| || ||||| |||| || ||| || ||
Sbjct 4160267 CAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAATCATCCGAT 4160208
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| || ||| ||||| || || ||||| || ||| |||||| ||
Sbjct 4160207 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAGCAG 4160148
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || || ||||| || |||||| ||||||| || | ||| || ||| |||||| |
Sbjct 4160147 CGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACTACAACATT 4160088
Query 206353 CAGAAAGAG 206361
||||| |||
Sbjct 4160087 CAGAAGGAG 4160079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181820603152973
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |