Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 1e-13 >seq2 Length=5759010 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || || || || ||| Sbjct 4160781 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 4160722 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || ||| || ||| || Sbjct 4160721 ACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 4160662 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| ||||||||| | || ||||| | || | | || |||||| || Sbjct 4160661 CGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAACATC 4160602 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| ||||||||||| Sbjct 4160601 CAGAAGGAGTCTACCCTTCACCTTGT 4160576 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || ||||| ||| ||||||||||| ||||| || |||| Sbjct 4160027 AAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCTGATACCATCGACAAC 4159968 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || || || ||| || | || || ||| Sbjct 4159967 GTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCCTGATTTTC 4159908 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| ||||||| || ||||| || ||| |||||| ||||||| ||| Sbjct 4159907 GCTGGTAAGCAGCTGGAAGACGGTCGGACTCTGAGCGACTACAACATCCAGAAGGAGAGC 4159848 Query 206365 ACTCTTCACCTTGTT 206379 ||||| || || ||| Sbjct 4159847 ACTCTGCATCTGGTT 4159833 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||||||||| || ||||| |||| || ||| || || Sbjct 4160267 CAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAATCATCCGAT 4160208 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || ||||| || ||| |||||| || Sbjct 4160207 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAGCAG 4160148 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || |||||| ||||||| || | ||| || ||| |||||| | Sbjct 4160147 CGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACTACAACATT 4160088 Query 206353 CAGAAAGAG 206361 ||||| ||| Sbjct 4160087 CAGAAGGAG 4160079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820603152973