Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7 208 7e-49 seq2 89.7 5e-13 >seq7 Length=2761852 Score = 208 bits (230), Expect = 7e-49 Identities = 984/1538 (64%), Gaps = 45/1538 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || ||||| || || || ||||||| | || | ||| |||| | ||| Sbjct 709452 TTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGC 709511 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || | || || ||||| | || || | ||| | || || |||||| || || Sbjct 709512 TCGAAGCATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGGAGCGACG 709571 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | ||| || || | ||||| | | ||| | ||||| | | | ||| |||||| Sbjct 709572 AGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCAC 709631 Query 147073 A--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGAC 147130 | ||| |||||| | |||| ||||||||| ||||| || | || | ||||| Sbjct 709632 AGGTCG--GAGGGCTTGACGTCCCACATGTCATACTGCAGGATGCCCTCAGATGCGGGTG 709689 Query 147131 TGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCG 147190 || ||||| ||| || || || || | || | ||||| || | Sbjct 709690 ATCCCTTGAACGATTCGTACGGGCCCTCAATCTTGGCAATCTCCATGGAAGCCTCAAGGG 709749 Query 147191 CTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGT 147250 | ||| ||| ||||| ||| ||| || ||||| || || || || ||| Sbjct 709750 CGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAA 709809 Query 147251 AAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTC 147310 | |||| ||||||| | || || || || | |||||| | |||||| || ||||||| Sbjct 709810 AGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACACCAATAGGTC 709869 Query 147311 GATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT--ATGGGATAGTGGTTGCGATCAATAAT 147368 | || ||||||| | || || || | || || ||||| |||||| || Sbjct 709870 GGTGGCGCATGTTGCTGT--TGCGGGCCTCCTGGACAGGGTAATGGTTCACATCAATGAT 709927 Query 147369 CTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGT 147428 |||||||||||| || || || || || | | | || |||| ||| || || Sbjct 709928 GCGGTTGAGGTTACGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAGCA 709987 Query 147429 CCCGTCTTCG-ACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCG 147487 || || | | | || ||| | | | ||| | ||| |||| |||||||| || Sbjct 709988 TCCTTCGTTGTAGTCG-ACGAAGGCGGGGAGGGCCAGAGAGGCCAAGTTGCAGACAGCAA 710046 Query 147488 TCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT---GCTGCATTTTATGA 147544 ||| |||| | | | ||||| | ||| || | ||| ||||| ||||| | | Sbjct 710047 CCTCATCGGGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTAGAGCTGCGGATAGT-- 710104 Query 147545 CTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 147604 ||||| || | ||| ||||| || || ||||| || ||| |||||||| | || Sbjct 710105 -TCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGT 710163 Query 147605 CGCCGGTCTCGACTTGCGTTTCAACGATAAACCTATGCAGGTCCTGCGCTCGCACCCGCT 147664 ||||||||| || | || | ||| | ||| | ||| || || | || Sbjct 710164 TACCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGGATGGTCT 710223 Query 147665 GCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGC 147724 || || |||||| | |||||| ||||||| ||||||||| |||||||||| Sbjct 710224 TGCGGCCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTAGC 710283 Query 147725 AATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATGTCGTCCGCGT 147781 | || |||||||| || || | | || ||||| |||| ||| || || | | || Sbjct 710284 AGTCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAGGTTCTTCTCGA 710343 Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841 | ||| || || || ||||| || | |||||| || | || ||||| || || Sbjct 710344 CA-CGCTTC--ATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGC---GC 710397 Query 147842 AATCCTCGGCGC--CCATGTTGCGTTTC--AAATTAAGCACGCTATAGATGTCGGCGTGC 147897 | |||| | || || | | || | | || ||| | | | ||| |||||||||| Sbjct 710398 GAACCTCCTCCTTACCGTGGTTC-TTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGTGC 710456 Query 147898 CAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGG 147954 ||||| || | ||||| ||| | ||||| |||||| |||||||||||||| | Sbjct 710457 CAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGACGTAT 710516 Query 147955 CGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTG 148014 || | ||||||| || || |||| |||||| | |||| | | |||||||||||| Sbjct 710517 CGAGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGGTG 710576 Query 148015 GAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCC 148073 || | | |||| ||| || | ||| ||||| | ||||| || || ||| Sbjct 710577 CCGGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAAACCAATACCACCAGCC 710636 Query 148074 GTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATGCCGTCGATGCTGTCG 148131 | ||| || || || ||| || | || || |||||| || || ||||||||| Sbjct 710637 AT-CTTGGAGAT--CATGGCACACGTCTTCAGAGTGTCGTAGATACCCTCAATGCTGTCG 710693 Query 148132 TTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAA 148191 | || | | | | || || || || ||| || | | | || || || ||| Sbjct 710694 TCCTTCATGTCGACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCAGCATTGAAG 710753 Query 148192 AGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGATACGTCTCAATAG 148249 |||||||| || || || || || || | ||| || | | | || ||||| | | Sbjct 710754 AGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGAC--ATGAGGTGGTATGTCTCGAGAA 710811 Query 148250 CGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTC 148309 | || |||||||| || ||||| | || || ||||||| |||||||||||| | Sbjct 710812 CACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATGTGCTGTGGCC 710871 Query 148310 GTTCGGCAA-CTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCA 148368 | ||| ||| |||| || || |||||| || ||| || || || ||| | ||| Sbjct 710872 GCTCGACAATCTTG-CCGTCGAGCTTGAGGAGGTATGATCGCTCCAGCGTCTTGAAGCCA 710930 Query 148369 AAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 ||||| | ||| | || ||| | ||||| ||||||| Sbjct 710931 AAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATGGC 710968 >seq2 Length=5759010 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | | ||| || || |||||||||||||||| ||| Sbjct 3574599 ACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGT 3574540 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| |||||||| || |||| | |||| || ||||| || || || || ||||| Sbjct 3574539 GCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCC 3574480 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || | | || | || |||| | |||||| || | Sbjct 3574479 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAG 3574420 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || || || || || || | |||||||||||| Sbjct 3574419 GGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 3574378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| | |||||| ||| |||||||| || || | Sbjct 4160591 GACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCG 4160650 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || ||||| ||||| || || || ||| || |||| Sbjct 4160651 AAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACA 4160710 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| || ||| || |||| || | || || || || || || || Sbjct 4160711 TTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTG 4160770 Query 132110 ATGAAAATCTGCATGA 132125 | ||| |||||||||| Sbjct 4160771 ACGAAGATCTGCATGA 4160786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611122550680