Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7 223 5e-52 seq2 86.0 9e-11 >seq7 Length=2761852 Score = 223 bits (246), Expect = 5e-52 Identities = 366/512 (71%), Gaps = 22/512 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||| ||||||||| | |||| Sbjct 1550817 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACTGCCGAGGAGATTGACC 1550875 Query 1455835 TCGGCGCCGACACGGTCCACTGG--GTGTCG-CTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | ||| | | ||||| || |||| ||| |||||| | |||||| Sbjct 1550876 TGTCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCT 1550935 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||| ||| || ||||||||| || |||||||| ||||||||||| || Sbjct 1550936 CTCACATCCTGGCC-TTCTTCGCCGCCTCGGACGGCATCGTCAACGAGAACCTGGTCGAG 1550994 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||| | || ||||| || | || ||||| ||||||||| Sbjct 1550995 CGCTTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGCTGCTTCTACGGCTTCCAGATCATG 1551054 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA-CCC 1456070 || || ||||| ||||| || || |||||||| || |||||||| ||| ||||||| | | Sbjct 1551055 ATGGAGAACATACACTCCGAGACGTACTCGCTGCTCATCGACACTTACATCAAGGAGCAC 1551114 Query 1456071 GGTC-GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | | | || | ||||||| ||| || || || | || | | | || |||| Sbjct 1551115 AGCCAGCGCAG--CTACCTCTTCAACGCGATTGAGACCATTCCTTGCATCCGCAAGAAGG 1551172 Query 1456130 CCGACTGGGCGATGAAGTGGATC---AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 | |||||||| || |||||| |||| || |||| ||||||| |||| || Sbjct 1551173 CTGACTGGGCTATCCGATGGATCCAGGACAA-GAACTCCTC----CTTTGCCCAGCGCCT 1551227 Query 1456187 CGTCGGCTTTGCCG-CGTCGAGGGCATCTTTTTC-TCGG-GCAGTTTCTGCGCCATCTTT 1456243 || | |||||||| ||||||||| ||||| ||| ||| || || | | ||||||| Sbjct 1551228 GGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGC--CTCCATCTTC 1551285 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||||||| || ||||||||||| || Sbjct 1551286 TGGCTCAAGAAGCGGGGTCTCATGCCCGGCCT 1551317 Score = 196 bits (216), Expect = 7e-44 Identities = 349/505 (69%), Gaps = 17/505 (3%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| |||||| | |||||| | ||| ||||||||| |||| |||||| Sbjct 710989 CACAAGGAGGAGCTCGACTCCGCCATCGTCTACGACCGAGACTTCAACTACCAATACTTT 710930 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCGG 259801 || | ||| || || || ||||| ||| | || | | ||||||||| Sbjct 710929 GGCTTCAAGACGCTGGAGCGATCATACCTCCTCAAGCTCGACGGCAAGATTGTCGAGCGG 710870 Query 259802 CCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAAT 259861 || ||| | ||| ||||||| || ||| ||||| | |||| || | ||||| | Sbjct 710869 CCACAGCACATGATCATGCGAGTGGCCGTTGGCA--TCTGGG------GA-GACGACATT 710819 Query 259862 GCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAGC 259920 | ||| || |||| || ||| | |||||| ||||| ||| |||||| || Sbjct 710818 G------AGCGTGTTCTCGAGACATACCACCTCATGTC-CAGCAAGTTCTTCACCCATGC 710766 Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980 | ||||| ||||| ||||| || || |||| | ||| || || ||||| ||| | Sbjct 710765 CTCCCCCACCCTCTTCAATGCTGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCCTGGT 710706 Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040 |||||||||| ||| || ||||| ||||| ||||| || ||| ||| || | || Sbjct 710705 CGACATGAAGGACGACAGCATTGAGGGTATCTACGACACTCTGAAGACGTGTGCCATGAT 710646 Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100 ||||||| ||| || || || ||||| || ||| | || ||| | ||| |||| Sbjct 710645 CTCCAAGATGGCTGGTGGTATTGGTTTGAACGTCCACCGCATCCGTGCCACCGGCTCCTA 710586 Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | | || |||||||||||| ||||||||| || | |||||||| || || || ||| | Sbjct 710585 CATTGCCGGCACCAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACAA 710526 Query 260161 CACGGCGCGCTACGTCGACCAGTGC 260185 ||| || || |||||||||||| || Sbjct 710525 CACTGCTCGATACGTCGACCAGGGC 710501 Score = 120 bits (132), Expect = 4e-21 Identities = 184/255 (72%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||| |||||| |||||| | ||||| | | |||| | ||||| | ||| Sbjct 1551427 ATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTCCTGACCGAGGCCCTGCC--TTGCG 1551484 Query 1456583 CTCATC--GGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 ||| | ||||||||| ||| | || ||| ||||||||||||||| || |||||||| Sbjct 1551485 CTCTGCTGGGCATGAACTCCAAC-CTGATGAAGCAGTACATTGAATTT-GTTGCCGACCG 1551542 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 |||||| | || |||||| || ||||| ||| | || ||||||| || | | Sbjct 1551543 CCTGCTGGTCGCTCTCGGCAACG-AGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTA 1551601 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACG 1456759 ||||| ||||| || | |||||||||||||| || ||| ||||| | ||| ||| Sbjct 1551602 TGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCGCCGACTACC 1551661 Query 1456760 CCAAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 1551662 AGAAGGCTGGTGTCA 1551676 Score = 87.8 bits (96), Expect = 3e-11 Identities = 171/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 2133582 ATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTGCCCTTTATCGGCAAGGCCCACGTG 2133641 |||||| | |||||| | ||||||||||||||| | ||||| | |||||||| ||| | Sbjct 51196 ATTGACATCTTCTCCCTCTGCGAGCACCACCTGGTACCCTTCACCGGCAAGGTGCACATC 51255 Query 2133642 GGCTACCTGCCCGCGGGCAAGATCATCGGTCTGAGCAAGATCCCGCGCATCGTCGACATG 2133701 |||||| | ||| | ||||||| | |||| | |||||||| | ||||||| Sbjct 51256 GGCTACATCCCCAACAACGCCGTCATCGGCATCTCCAAGCTGCCGCGCATTGCCGACATG 51315 Query 2133702 TTTTCCGACCGCTTCCAAGTACAGGAGGCACTCACGCGCCAGATCGCCGAGAGCGTGAGC 2133761 || ||| |||| | || | |||||| || ||| | |||||| | | | | Sbjct 51316 TTCTCCCGCCGCCTGCAGATCCAGGAGCGCCTTACGAAAGAAATCGCCAACGCCATCTTC 51375 Query 2133762 CAGGTTACGGGCGCGCGCGGCGTCGGCGTCGTCCTCGAGGGCCTGCACATGTGCGTGTGT 2133821 | || | | | | ||||||| ||| ||| | ||| | ||| ||||| || Sbjct 51376 GACGTCCTGCGGCCCCAGGGCGTCGCCGTGGTCATAGAGTCCAGCCACCTGTGCATGGTG 51435 Query 2133822 ATGCGCGGCGTGC 2133834 ||||||||||||| Sbjct 51436 ATGCGCGGCGTGC 51448 >seq2 Length=5759010 Score = 86.0 bits (94), Expect = 9e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 724998 GACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAAC 725057 ||||| |||| ||| | | ||||||||| ||||| || ||||||| | Sbjct 1996753 GACATCTTCGAGCGCGTTGCCACCGAGGCTTCCAAGCTGGCCGCCTACAACAAGAAGTCC 1996694 Query 725058 ACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCC 725117 || ||| | || ||||||||||| |||| || |||||| ||| ||||| |||||| Sbjct 1996693 ACAATCTCTTCCCGAGAGATCCAGACGTCCGTCCGACTGATCCTGCCGGGCGAGCTGGCC 1996634 Query 725118 AGGCACGCCGTCTCCGAGGGCACCA 725142 | |||||||||||| |||||||||| Sbjct 1996633 AAGCACGCCGTCTCTGAGGGCACCA 1996609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809946126106