Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq2 125 6e-24 >seq3 Length=4316785 Score = 127 bits (140), Expect = 2e-24 Identities = 144/192 (75%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 35536 TAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTT 35595 ||||| || | |||| || |||||||| |||| || |||||| | || || |||||||| Sbjct 838086 TAACG-ACGCACCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTT 838144 Query 35596 ACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG 35655 ||| || || ||||| ||||||||||||| |||| || |||||||||| |||||| Sbjct 838145 ACCAGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGA 838204 Query 35656 CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAA 35715 ||| | | | | | ||||||| || || ||||| | ||||| || || ||||||| Sbjct 838205 CTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAG 838264 Query 35716 AGTTTTCACAAA 35727 || ||||| || Sbjct 838265 GGTCTTCACGAA 838276 >seq2 Length=5759010 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||| || | || |||||||| || |||||||| ||| | Sbjct 3574604 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3574545 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || ||||| |||| ||||||||||||| || Sbjct 3574544 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 3574485 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | || |||||||||| |||||| ||| | |||| | | |||||| || ||||| Sbjct 3574484 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCAC 3574426 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||||| || ||||| | || || || || |||||||| Sbjct 3574425 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 3574378 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||| ||| | || |||||||| || |||||||| ||| | Sbjct 4159816 CCACCACGGAGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 4159875 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||||||||||||| || || |||| ||||||||||| | ||| Sbjct 4159876 AGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 4159935 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| ||||| ||| | |||| | | || || |||||||| Sbjct 4159936 ATACCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCGATGGTATCAGATGATTCCAC 4159994 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || ||||| |||||||||| || || || || |||||||| Sbjct 4159995 TTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | || |||||||| ||||||||||| ||| | Sbjct 4160044 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 4160103 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||||||||||||| || || |||| ||||||||||||| ||| Sbjct 4160104 AGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 4160163 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | ||| |||||| |||||| ||| | |||| | | || ||| ||||| || Sbjct 4160164 ATACCCTCTTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTATCGGATGATTCGAC 4160222 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| ||||| || || || || | || || || || |||||||| Sbjct 4160223 CTCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || || |||||||| || || || Sbjct 4160593 CTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAA 4160652 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| || |||||||||| ||||| ||||| | | Sbjct 4160653 GATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACATT 4160712 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| || ||||| | ||||| || || || || | || || || Sbjct 4160713 GTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 4160772 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 4160773 GAAGATCTGCAT 4160784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | |||||| |||| || |||||||| || ||||| Sbjct 4160307 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 4160366 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| || |||||||||| |||||| ||| | || Sbjct 4160367 GATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 4160425 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 || | | ||||| || || ||||| | || ||||| || || |||| Sbjct 4160426 TGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATCGTCTTGCCGGTCA 4160476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793526746040