Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq2 122 9e-23
seq3 84.2 2e-11
>seq2
Length=5759010
Score = 122 bits (134), Expect = 9e-23
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555
|| |||| || ||||| || ||| ||||| || ||||||||||||| | |||| |
Sbjct 3574595 AGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGG 3574536
Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615
|| |||||||| ||||| ||||| |||| |||||||| || || || ||||| ||
Sbjct 3574535 CCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 3574476
Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675
|| || || || || ||||| ||| | |||||||| || ||||| || || ||
Sbjct 3574475 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTG 3574416
Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
|| || || || || | || || |||||||| ||||| |||
Sbjct 3574415 ATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 3574374
Score = 113 bits (124), Expect = 5e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || || || || ||| ||||| || |||||||||||||
Sbjct 4159816 CCACCACGGAGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 4159875
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || || ||| || ||||| || || || ||||||| |||||||| || || ||
Sbjct 4159876 AGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGG 4159935
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || ||||| || ||||| ||| | || || || ||||||||
Sbjct 4159936 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACT 4159995
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| |||||||| || ||||| || | || |||||||| || |||||
Sbjct 4159996 TCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042
Score = 111 bits (122), Expect = 2e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|||||||| || ||||| ||||| || ||||||||||| | ||| | ||| ||
Sbjct 4160290 ACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 4160349
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| ||||| ||||| || | ||||||||| || || || ||||| || || || ||
Sbjct 4160350 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 4160409
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || ||||| ||| | ||||| || || || || ||||||||||| || ||
Sbjct 4160410 ATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATCGTCTTG 4160469
Query 134685 CCGGTTAAAGTTTTAACGA 134703
||||| | || || ||||
Sbjct 4160470 CCGGTCAGGGTCTTGACGA 4160488
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || || || ||||| || ||||||||||| | ||| | || |||
Sbjct 4160576 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCG 4160635
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||| || || || || || | ||||||||| || || || ||||| || || || |||
Sbjct 4160636 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 4160695
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || ||| | ||||||||||| || || ||||| || ||||| ||
Sbjct 4160696 ATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 4160755
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| | || || ||||| || |||||
Sbjct 4160756 CCGGTGAGGGTCTTGACGAAGATCTGCAT 4160784
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | || | ||| || ||| ||||| ||||||||||||||||
Sbjct 4160044 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 4160103
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | ||| || ||||| || || || ||||||| |||||||| || || ||
Sbjct 4160104 AGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 4160163
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || ||||| || || || || ||||| ||| | || ||||| ||||| ||
Sbjct 4160164 ATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGATTCGACC 4160223
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || || || || || || | || || ||||| || |||||
Sbjct 4160224 TCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270
>seq3
Length=4316785
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583
|||| || |||||||||||| | ||| | || |||||||| || || || || |
Sbjct 838096 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 838155
Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643
|||| |||||||| || || || ||||| || || || || || || ||||| ||
Sbjct 838156 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 838215
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703
| | |||||||| || || || || || || ||||| || || || | || || ||||
Sbjct 838216 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 838275
Query 134704 A 134704
|
Sbjct 838276 A 838276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398317872760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |