Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq7 131 5e-25 >seq7 Length=2761852 Score = 131 bits (144), Expect = 5e-25 Identities = 352/528 (67%), Gaps = 19/528 (4%) Strand=Plus/Plus Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408 ||||||||||| || ||||||||| || ||| |||||| | || || | | |||| Sbjct 1550863 GAGGAGATTGACCTGTCCAAGGACCTGCACGACTGGAACAACCGCCTG---AACGATGA- 1550918 Query 443409 CGCGATTT-CTTCAAATG---CATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGG 443464 || || | ||||| | |||| |||||||||| || | ||||| |||||| Sbjct 1550919 CGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATCGTCAA 1550978 Query 443465 TGAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTA 443524 ||||| ||||| ||| ||| || ||| | ||||||| |||| |||||| Sbjct 1550979 CGAGAACCTGGTCGAGCGCTTCAGCGGCGAGGTCCAGATTCCCGAGGCTCGCTGCTTCTA 1551038 Query 443525 CGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAAGAC 443584 || ||||| | ||||||||||| ||| ||||| ||| | | | ||| ||| Sbjct 1551039 CGGCTTCCAGATCATGATGGAGAACATACACTCCGAGACGTACTCGCTGCTCATC--GAC 1551096 Query 443585 ACTAATTCCGAACGAAGACGAACAGCGG---TCCATCTTCTCATCGTTCATGACCACGCC 443641 ||| | | || || || ||||| | | ||||| || | ||||| || Sbjct 1551097 ACTTACATC-AAGGAGCACAGCCAGCGCAGCTACCTCTTCAACGCGATTGAGACCATTCC 1551155 Query 443642 AGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGA--ACGAGAAAATCTCAGC 443699 ||||| | ||| || |||||| | | ||| || | || |||| ||| | Sbjct 1551156 TTGCATCCGCAAGAAGGCTGACTGGGCTATCCGATGGATCCAGGACAAGAACTCCTC--C 1551213 Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 || | | |||| || || || ||||| | ||||| || | || || ||||| |||| Sbjct 1551214 TTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTT 1551273 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 ||||||||||||||| | || ||||| || || |||| ||| ||||||||| ||||| Sbjct 1551274 -GCCTCCATCTTCTGGCTCAAGAAGCGGGGTCTCATGCCCGGCCTGACCTTTTCCAACGA 1551332 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCT 443867 || ||| || ||||||||| |||| ||||| ||||| || || Sbjct 1551333 GCTCATCTCGCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCT 1551380 Score = 95.1 bits (104), Expect = 4e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 254971 CGGCATTATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGG 255030 ||||||||| || ||| | || || ||||||||| ||||| |||||||| || || || Sbjct 710558 CGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCTCGATACGTCGACCAGGGCGG 710499 Query 255031 CGGCAAACGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGAC 255082 | ||| || || || || || |||||||||| ||||| |||||||||||| Sbjct 710498 CAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGAC 710447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335735442785