Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 288 1e-72 >seq7 Length=2761852 Score = 288 bits (318), Expect = 1e-72 Identities = 1153/1788 (64%), Gaps = 67/1788 (4%) Strand=Plus/Plus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 ||||||| || || |||| |||| | ||||| |||||||| ||||||||||| | Sbjct 709114 TGAACTGGATAGGCGCGGCTGCGGCCTGGGTACGGAGGTAGTACATGCCGGTCTTGAGAC 709173 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 110450 | | ||||| || | ||||| | || |||| |||||| || | |||| Sbjct 709174 CGAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGGGGTCCTTCATGT 709233 Query 110451 AGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAAT 110508 || ||| | ||| |||| |||| ||||| || || | |||||||| | | Sbjct 709234 GGATGTTGAGGGACTGGGACT--GGTCGATGAAAGCACCACGATCGGCCGCCATCTGGAC 709291 Query 110509 GACATCCTTCAT-CTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTG 110564 || || | || | || ||||| || || || ||| |||||| || || | Sbjct 709292 GAT----TTGACGCTGAGAGATCTCCCAGACGGTCTTGTACAGAGCCTTGATGTCCTCGG 709347 Query 110565 GGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCT 110624 |||| | | ||| ||||||||||| || | | | ||| | | |||||| | | Sbjct 709348 GGATGTTGGGGATGTTCTGGATGGAGCCGTTCTCGGCAATGATGCGGTTCTTCATGGCGT 709407 Query 110625 TGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACT 110684 |||||| || || | | ||||| |||| || |||||||| |||| Sbjct 709408 CGGACCACAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAGGGGTTGACAACCTGGAACT 709467 Query 110685 CACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTAT 110744 |||| || ||| | || | |||||||||| | ||||| || || |||||||| || | Sbjct 709468 CACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGTGTAGGGCTCGAAGCATTCGTTGT 709527 Query 110745 TACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAA 110804 | |||| ||| || | ||| ||| || ||||| || || | | | ||||| || | Sbjct 709528 TGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGGAGCGACGAGCAAGCTGTTGCGGA 709587 Query 110805 GACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA---GTTG-AGCTTGGTT 110860 ||| | ||||||||| | |||||||| ||||| || | || | || || | Sbjct 709588 CACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCACAGGTCGGAG---GGCT 709644 Query 110861 TCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTT 110920 | || | ||||||||||| |||| || | || | || ||||| || |||| || | | Sbjct 709645 TGACGT-CCCACATGTCATACTGCAGGATGCCCTCAGATGCGGGTGATCCCTTGAACGAT 709703 Query 110921 TCATA-GGAACCTTGGGCTTCAGCCAATTCACA-GCTCGCCTCCAGGGATGCGTGATACA 110978 || || || ||| ||| | |||| || | ||||| |||| || || || | Sbjct 709704 TCGTACGGGCCCTCAATCTT--GGCAATCTCCATGGAAGCCTCAAGGGCGGCATGGTAAA 709761 Query 110979 TGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGC 111038 |||| || ||||| | |||| ||| || ||| || ||||| | | || || Sbjct 709762 TGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCAGGAGACTCAAAGG-GCAGACGC 709820 Query 111039 ACAAA-ATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATA 111097 | | | || | || || ||||| |||||||| | ||||||||||| ||| ||||| Sbjct 709821 AGAGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACACCAATAGGTCGGTGGCGCATG 709880 Query 111098 TTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTT 111157 || || || || || || || ||| || ||||||| ||||| || || Sbjct 709881 TTGCTGTTGCGGGCCTCCTGGACAGGGTAATGGTTCACATCAATGATGCGGTTGAGGTTA 709940 Query 111158 TTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA 111217 | || | ||| |||| ||| ||||| || | | || | | || |||| Sbjct 709941 CGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTA-----GCATC-CTTCG 709994 Query 111218 TTG------ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCC 111271 ||| || | || ||||| | || ||||| ||||| ||||| |||||| Sbjct 709995 TTGTAGTCGACGAAGGCGGGGAGGGCCAGAGAGGCCAAGTTGCAGACAGCAACCTCATCG 710054 Query 111272 TTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTC 111331 | |||||| | || || || || | ||| || || || || |||| ||| Sbjct 710055 GGGGCACAGTACTCGATGATCTCAGTGCAGAGGTTAGAGCTGCGGATAGTTCCCAGGTTC 710114 Query 111332 TTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 111391 || ||||| ||||| |||||| |||||||||||||||| |||| | || ||||| Sbjct 710115 TTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCATGAAGGGGTTACCGGTCTCG 710174 Query 111392 GTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG--GCC 111448 ||||| | | || || | | ||| | | || | | || |||| ||| ||| Sbjct 710175 GTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCGG----ATGGTCTTGCGGCC 710230 Query 111449 -CGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGA 111507 |||||||| |||||||||| ||| || || ||||||||||| || ||| | Sbjct 710231 ACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCCGTAGCAGTCAGC 710290 Query 111508 GAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTC--CTCAACCCG 111564 || || || || || || || || | || | ||| | ||| ||| ||| || || Sbjct 710291 AAGGCCAGG-GCATTCGTTGGGGCACATGAGCGTCCAGT--CCAGGTTCTTCTCGACACG 710347 Query 111565 CTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTC 111624 ||||||||| || || ||||||||||||| || || || | | ||| |||| || Sbjct 710348 CTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCGAGCGCGAACCTCCTC 710407 Query 111625 GTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 111684 | ||| ||||| || | |||||||| || | || || |||||||| ||||| || Sbjct 710408 CTTACCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGTGCCAGGGCTCGAG 710467 Query 111685 ATAGACTGCGATAGATCC------CTT-TCGACGCCCAGCTTGATTTACATAGCGCGCTG 111737 |||| || | | || ||| | | ||||| | | || | || || || | Sbjct 710468 GTAGATGGCAAAGGCACCAGGACGCTTGTTGCCGCCCTGGTCGA----CGTATCGAGCAG 710523 Query 111738 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 111797 || ||| || || || ||||| || ||||| || | || || || || || || Sbjct 710524 TGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGGTGCCGGCAA 710583 Query 111798 TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG 111857 | || |||| | | |||| || || |||||||| |||||| ||| | Sbjct 710584 TGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAAACCAATACCACCAGCCATCTTGG 710643 Query 111858 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 111917 |||| |||||| | | ||||| | |||||||| | || ||| ||||| || Sbjct 710644 AGATCATGGCACACGTCTTCAGAGTGTCGTAGATACCCTCAATGCTGTCGTCCTTCATGT 710703 Query 111918 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 111977 ||| |||||||| ||||| ||| | | || |||||||||||||||||||| || | Sbjct 710704 CGACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTACCAGCATTGAAGAGGGTGGGGG 710763 Query 111978 TTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAAT 112035 || || ||| | | |||| |||||| || ||||||||| | ||| ||||| Sbjct 710764 AGGCATGGGTGA--AGAACTTGCTGGACATGAGGTGGTATGTCTCGAGAACACGCTCAAT 710821 Query 112036 GTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||| || || |||||| | || || ||||||| ||||| |||||| Sbjct 710822 GTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATGTGCTGTGG 710869 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| |||||||| || || || || || || || || ||| || || Sbjct 1551372 GGCAAAGTCCGTGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCC 1551313 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||||||||||||||| | ||| | || | | || | ||| ||||||||| Sbjct 1551312 GGGCATGAGACCCCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGAT 1551253 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAA 122836 |||||| || ||||| |||| ||||| | ||| |||||| ||| ||| | | | Sbjct 1551252 ACCCTCGACGGCGGCAAAGGCAACCAGGCGCTGGGCAAAGGAG-GAGTTCTTGTCCTGGA 1551194 Query 122837 ACCATTTCATTGCCCATTTCGCCTTCTT 122864 |||| || ||||| | |||||||| Sbjct 1551193 TCCATCGGATAGCCCAGTCAGCCTTCTT 1551166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031897944800