Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 297 2e-75 >seq7 Length=2761852 Score = 297 bits (328), Expect = 2e-75 Identities = 941/1436 (66%), Gaps = 37/1436 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| ||||||| |||||| | || || || || |||||||| ||| Sbjct 710869 CCACAGCACATGATCATGCGAGTGGCCGTTGGCATCTGGGGAGACGACATTGAGCGTGTT 710810 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||||||| || |||||| |||| | | ||| || || | || ||||||| Sbjct 710809 CTCGAGACATACCACCTCATGTCCAGCAAGTTCT--TCACCCATGCCTCCCCCACCCTCT 710752 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 ||||||||||||| || | |||| ||||| |||||||| ||| || ||||| | Sbjct 710751 TCAATGCTGGTACCCCGCAAGCCCAGCTGTCCTCATGCTTCCTGGTCGACATGAAGGACG 710692 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | |||||||| | ||||| | | |||||| ||||| ||| ||||| Sbjct 710691 ACAGCATTGAGGGTATCTACGACACTCTGAAGACGTGTGCCATGATCTCCAAGATGGCTG 710632 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | |||||||| || || |||| | | |||| || ||| || || | Sbjct 710631 GTGGTATTGGTTTGAACGTCCACCGCATCCGTGCCACCGGCTCCTACATTGCCGGCACCA 710572 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || || | || ||||| || ||||| || || || ||| ||| || || || | Sbjct 710571 ACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCTCGATACG 710512 Query 104580 TAAATCAAGCTGGGCGTCGA-AAGGGATCTA------TCGCAGTCTATCTTGAGCCATGG 104632 | | || ||||| | | ||| | || | || |||| || ||||| ||| Sbjct 710511 TCGACCA----GGGCGGCAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGG 710456 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | || |||||||| | || ||||| ||| | ||||||| ||| Sbjct 710455 CACGCCGACGTCTTTGACTTCCTTGATCTCCGCAAGAACCACGGTAAGGAGGAGGTTCGC 710396 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | ||||| || ||| || || |||||||| ||||||||||||||| | || ||| Sbjct 710395 GCT--CGCGACCTGTTCCTTGCCCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGA 710338 Query 104751 AGA--GTGGCAATTGGTCTCTCTTTTGTCCAGAC-AAGGCACCTGGTCTCTCCGATGCCG 104807 ||| ||| | ||| | ||| | || || || || || ||||| || | || | Sbjct 710337 AGAACCTGG--ACTGGACGCTCATGTGCCCCAACGAATGC-CCTGGCCTTGCTGACTGCT 710281 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGCGACTGCG 104866 || ||||||||||| || || ||| |||||||||| || || || ||| | | Sbjct 710280 ACGGCGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGCGAGGGACGTGGCCGC-AAG 710222 Query 104867 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 || | | ||| | || | ||||| | | || || || |||| |||||||| |||| Sbjct 710221 ACCATCCGCGCT-CAGAAGCTGTGGTACTCCATCCTGGAGGCTCAGACCGAGACCGGTAA 710163 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||| ||||| || ||| |||| ||||| || || ||||| |||| Sbjct 710162 CCCCTTCATGCTCTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAAC 710103 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||| || || || ||||| || || ||| | || | | | |||||| || Sbjct 710102 TATCCGCAGCTCTAACCTCTGCACTGAGATCATCGAGTACTGTGCCCCCGATGAGGTTGC 710043 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA-CAT 105104 ||| || ||| | || || | || |||||| | || || | | | || || | Sbjct 710042 TGTCTGCAACTTGGCCTCTCTGGCCCTCCCCGCCTTCGTCGA-CTACAACGAAGGATGCT 709984 Query 105105 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTA 105164 || | | || || |||||||| || || ||| | ||||| ||| | | | Sbjct 709983 ACGACTTCAAGAAGCTTCACGAAGTCACCAAGGTGGTCGTCCGTAACCTCAACCGCATCA 709924 Query 105165 TTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 ||||| || |||||| || || || || || || ||| | ||||| || | Sbjct 709923 TTGATGTGAACCATTACCCTGTCCAGGAGGCCCGCAACAGCAACATGCGCCACCGACCTA 709864 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGAT 105283 ||||| |||||||||||||||| || || | ||| | || || || | | ||||| Sbjct 709863 TTGGTGTCGGTGTTCAGGGTCTTGCTGACGCGTTCCTCGCTCTG-CGTCTGCCCTTTGAG 709805 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 || || || || | || || || || |||||||| || || ||||| ||| Sbjct 709804 TCTCCTGAGGCTCGCGAGCTGAACAAGCAGATCTTCGAGACCATTTACCATGCCGCCCTT 709745 Query 105344 GAGGCGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 105401 ||||| | || ||| | || || |||| || || || ||| | || |||| || | Sbjct 709744 GAGGC--TTCCATGGAGATTGCCAAGATTGAGGGCCCGTACGAATCGTTCAAGGGATCAC 709687 Query 105402 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG 105461 | || || | || | || || | ||| |||||||| | || || | | | Sbjct 709686 CCGCATCTGAGGGCATCCTGCAGTATGACATGTGGGACGTCAAGCCCTCCGACCTGTGGG 709627 Query 105462 ACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 | ||||| | |||||||| | ||||||||| | ||| | || ||||| | ||| | | Sbjct 709626 AGTGGGACTCCCTCAAGGAGCAGATCAAGGAGCACGGTGTCCGCAACAGCTTGCTCGTCG 709567 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || ||| ||| | || ||| |||| || || |||||||| || |||| Sbjct 709566 CTCCCATGCCCACTGCCAGCACTTCTCAGATCCTGGGCAACAACGAATGCTTCGAGCCCT 709507 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 105637 |||| | |||||||| | | || | ||| || || ||||| | |||||||| Sbjct 709506 ACACTTCCAACATCTACCAGCGACGTGTCCTTGCTGGTGAGTTCCAGGTTGTCAAC 709451 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||| |||| || | || ||||| || ||||||||||||||| ||| || Sbjct 1551211 TCCTTTGCCCAGCGCCTGGTTGCCTTTGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCC 1551270 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || | | || | |||||||||||||| ||||||||||| || || ||| |||||| Sbjct 1551271 TTTGCCTCCATCTTCTGGCTCAAGAAGCGGGGTCTCATGCCCGGCCTGACCTTTTCCAAC 1551330 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||| ||||||||||| || ||| || ||||| Sbjct 1551331 GAGCTCATCTCGCGTGACGAGGGTCTGCACACGGACTTTGC 1551371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260705220120