Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 141 3e-28 seq3 113 1e-19 >seq2 Length=5759010 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || ||||| ||||| |||||||| || || || || || || Sbjct 4160554 CATACCACCGCGAAGGCGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTC 4160613 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || |||||||| ||||| ||||| ||||| ||||| Sbjct 4160614 TGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGG 4160673 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || ||||| || || | || || | || Sbjct 4160674 AGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTC 4160733 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 4160734 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4160784 Score = 129 bits (142), Expect = 2e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || || || || || || ||||| || || || || || || Sbjct 4160268 CATACCACCGCGAAGGCGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTC 4160327 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||||| || || ||||| || || ||||||||||| ||||| ||||| ||||| Sbjct 4160328 AGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGG 4160387 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || || || || || | ||||| | || Sbjct 4160388 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTC 4160447 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 ||| || || |||| ||||| ||||| || || || || Sbjct 4160448 AACCTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGAC 4160486 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||| || ||||| || || || Sbjct 4160040 CATACCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTC 4160099 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || || ||||| || || || ||||| || || || || ||||| || || Sbjct 4160100 GCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGG 4160159 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || ||||| ||||| || || | || || || || || | ||| |||| ||| Sbjct 4160160 GGGAATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGATTC 4160219 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | |||||||| || || || || || || |||||||| Sbjct 4160220 GACCTCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270 >seq3 Length=4316785 Score = 113 bits (124), Expect = 1e-19 Identities = 469/733 (64%), Gaps = 14/733 (2%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG-TGTAGA 349263 || ||||| || |||||||| || || || || | | | | | | || || ||| || Sbjct 1322608 GGTATCGACTTGGGTACTACCTACTCATGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 1322550 Query 349264 AATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAAC 349323 || || || || || || |||||| |||| ||||| || | |||||| || ||||| || Sbjct 1322549 TATCATCGCCAACGACCAGGGTAACCGAACGACGCCCTCGTTCGTTGCCTTCACCGACAC 1322490 Query 349324 TGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGT 349383 |||||| ||||||||||| | || || || || | || || || | || || || Sbjct 1322489 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 1322430 Query 349384 TTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTG 349439 || || || ||||| | ||||| | | || | ||| | || || | | Sbjct 1322429 CTTCGACGCCAAGCGGTTGATTGGCCGCAAGTTCGCCGACCCTGAGGTC----CAGGCCG 1322374 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499 | | || || || || || | || | | | |||| | | || |||| |||| Sbjct 1322373 ACATGAAGCACTTCCCCTTCAAGGTCAT-CGACAAGAACTCCA--AGCCCGTTATCGAGG 1322317 Query 349500 TTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559 |||| | || || || | || || ||||| || || || || ||||| | Sbjct 1322316 TTGAGTTCAAGGGCGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGGTCCTGA 1322257 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 || ||| || | || || || || | ||| || || | | || || || | Sbjct 1322256 CCAAGATGCGTGAGACCGCCGAGGCCTACCTTGGTACCACTGTCAACAACGCCGTCATCA 1322197 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 |||| || ||||| || || || ||||||| || || || || || || ||||| Sbjct 1322196 CTGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTG 1322137 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || | || || || | || || || || ||||| || || || || || || || | Sbjct 1322136 CCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATCGCCTACGGCC 1322077 Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 |||| || | | || || || | || || || ||| | ||||||||||| | Sbjct 1322076 TTGACAAGAAGGTCGAGGGCGAGCGCAACGTGCTCATCTTCGATCTCGGTGGTGGTACCT 1322017 Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 | ||||| || || || || |||| ||||| || || || || || | ||||| |||| Sbjct 1322016 TCGATGTGTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTG 1321957 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919 | || || | ||||| || || || || || ||||| || || || || || || | Sbjct 1321956 ACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTCAACGAGT 1321897 Query 349920 TTAAGCGTCAAGC 349932 | ||||| ||||| Sbjct 1321896 TCAAGCG-CAAGC 1321885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254147615439