Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2 141 3e-28
seq3 113 1e-19
>seq2
Length=5759010
Score = 141 bits (156), Expect = 3e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | || ||||| ||||| |||||||| || || || || || ||
Sbjct 4160554 CATACCACCGCGAAGGCGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTC 4160613
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || ||||| || || || |||||||| ||||| ||||| ||||| |||||
Sbjct 4160614 TGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGG 4160673
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || |||||||| || | || ||||| || || | || || | ||
Sbjct 4160674 AGGAATGCCCTCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTC 4160733
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | ||||| ||||| || || || || || ||||||||
Sbjct 4160734 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4160784
Score = 129 bits (142), Expect = 2e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | || || || || || || ||||| || || || || || ||
Sbjct 4160268 CATACCACCGCGAAGGCGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTC 4160327
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | ||||| || || ||||| || || ||||||||||| ||||| ||||| |||||
Sbjct 4160328 AGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGG 4160387
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || || ||||| || || | || || || || || | ||||| | ||
Sbjct 4160388 AGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTC 4160447
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
||| || || |||| ||||| ||||| || || || ||
Sbjct 4160448 AACCTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGAC 4160486
Score = 102 bits (112), Expect = 2e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || || || ||| || ||||| || || ||
Sbjct 4160040 CATACCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTC 4160099
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || || || ||||| || || || ||||| || || || || ||||| || ||
Sbjct 4160100 GCTCAGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGG 4160159
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
||||| || ||||| ||||| || || | || || || || || | ||| |||| |||
Sbjct 4160160 GGGAATACCCTCTTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGATTC 4160219
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || | |||||||| || || || || || || ||||||||
Sbjct 4160220 GACCTCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270
>seq3
Length=4316785
Score = 113 bits (124), Expect = 1e-19
Identities = 469/733 (64%), Gaps = 14/733 (2%)
Strand=Plus/Minus
Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCG-TGTAGA 349263
|| ||||| || |||||||| || || || || | | | | | | || || ||| ||
Sbjct 1322608 GGTATCGACTTGGGTACTACCTACTCATGCGTCGGTATCTTCCGTGAGGACCGATGT-GA 1322550
Query 349264 AATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAAC 349323
|| || || || || || |||||| |||| ||||| || | |||||| || ||||| ||
Sbjct 1322549 TATCATCGCCAACGACCAGGGTAACCGAACGACGCCCTCGTTCGTTGCCTTCACCGACAC 1322490
Query 349324 TGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGT 349383
|||||| ||||||||||| | || || || || | || || || | || || ||
Sbjct 1322489 CGAGCGTCTGATTGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACCGT 1322430
Query 349384 TTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATCTG 349439
|| || || ||||| | ||||| | | || | ||| | || || | |
Sbjct 1322429 CTTCGACGCCAAGCGGTTGATTGGCCGCAAGTTCGCCGACCCTGAGGTC----CAGGCCG 1322374
Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499
| | || || || || || | || | | | |||| | | || |||| ||||
Sbjct 1322373 ACATGAAGCACTTCCCCTTCAAGGTCAT-CGACAAGAACTCCA--AGCCCGTTATCGAGG 1322317
Query 349500 TTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559
|||| | || || || | || || ||||| || || || || ||||| |
Sbjct 1322316 TTGAGTTCAAGGGCGAGAAGAAGACCTTCACCCCCGAGGAGATCTCCTCCATGGTCCTGA 1322257
Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619
|| ||| || | || || || || | ||| || || | | || || || |
Sbjct 1322256 CCAAGATGCGTGAGACCGCCGAGGCCTACCTTGGTACCACTGTCAACAACGCCGTCATCA 1322197
Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679
|||| || ||||| || || || ||||||| || || || || || || |||||
Sbjct 1322196 CTGTCCCCGCCTACTTCAACGACAGCCAGCGTCAGGCCACCAAGGACGCCGGTCTCATTG 1322137
Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739
| || | || || || | || || || || ||||| || || || || || || || |
Sbjct 1322136 CCGGTCTCAACGTCCTGCGTATCATCAACGAGCCCACCGCCGCTGCCATCGCCTACGGCC 1322077
Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799
|||| || | | || || || | || || || ||| | ||||||||||| |
Sbjct 1322076 TTGACAAGAAGGTCGAGGGCGAGCGCAACGTGCTCATCTTCGATCTCGGTGGTGGTACCT 1322017
Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859
| ||||| || || || || |||| ||||| || || || || || | ||||| ||||
Sbjct 1322016 TCGATGTGTCCCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCCGGTG 1321957
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919
| || || | ||||| || || || || || ||||| || || || || || || |
Sbjct 1321956 ACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTCAACGAGT 1321897
Query 349920 TTAAGCGTCAAGC 349932
| ||||| |||||
Sbjct 1321896 TCAAGCG-CAAGC 1321885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515254147615439
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |