Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 260 2e-64 seq3 98.7 1e-15 >seq7 Length=2761852 Score = 260 bits (288), Expect = 2e-64 Identities = 512/750 (68%), Gaps = 8/750 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | || ||| || |||||| |||||| | ||||| ||| Sbjct 710856 TCATGCGAGTGGCCGTTGGCATCTGGGGAGACGACATTGAGCGTGTTCTCGAGACATACC 710797 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | |||| ||| || || ||| | || ||||| ||||| |||||||| Sbjct 710796 ACCTCATGTCCAGCAAGTTCTTCACCCATGCCTCCCCCACCCTCTTCAATGCTGGTACCC 710737 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || | ||| |||| ||||||||||| | |||||||| ||| || || || | Sbjct 710736 CGCAAGCCCAGCTGTCCTCATGCTTCCTGGTCGACATGAAGGACGACAGCATTGAGGGTA 710677 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || || ||| ||||||| ||||||||| | | |||||||| ||| | Sbjct 710676 TCTACGACACTCTGAAGACGTGTGCCATGATCTCCAAGATGGCTGGTGGTATTGGTTTGA 710617 Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || || | || ||||||| | |||| | || || || |||||| | || | Sbjct 710616 ACG--TCCACCGCATCCGTGCCACCGGCTCCTACATTGCCGGCACCAACGGCACCTCCAA 710559 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || | || ||||| || |||||||||||||| || || |||||| ||||||| || Sbjct 710558 CGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCTCGATACGTCGACCAGGGCGG 710499 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | || ||||||||||||||||| |||||||||||| | | || Sbjct 710498 CAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTGGCACGCCGACGTCTTTGA 710439 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 || || || || || ||| || ||| | || ||| | ||| || |||||||| Sbjct 710438 CTTCCTTGATCTCCGCAAGAACCACGGTAAGGAGGAGGTTCGCGCTCGCGACCTGTTCCT 710379 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || ||||||||||| || ||||||||| | || |||||| || ||| ||| || Sbjct 710378 TGCCCTGTGGATTCCCGATCTCTTCATGAAGCGTGTCGAGAAGAACCTGGACTGGACGCT 710319 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 |||||||| ||||| ||||| |||| | | | || |||||| ||||||||| | | Sbjct 710318 CATGTGCCCCAACGAATGCCCTGGCCTTGCTGACTG-CTACGGCGAGGAGTTTGAGGCTC 710260 Query 53790 TGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 |||| | ||||| || | |||| || | |||| || || | || | Sbjct 710259 TGTACGAAAAGTACG-AGAGCGAGGGACGTGGCCGCAAGACCATCCGCGCTCAGAAGCTG 710201 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGAT 53908 ||| | | ||||| || ||| ||||| || | || | |||| |||||||||| Sbjct 710200 TGGTACTCCATCCTGGAGGCTCAGACCGAGACCGGTAACCCCTTCATGCTCTACAAGGAT 710141 Query 53909 TCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||| |||||||||||||||||| Sbjct 710140 CACTGCAACCGCAAGAGCAACCAGAAGAAC 710111 Score = 138 bits (152), Expect = 1e-27 Identities = 536/820 (65%), Gaps = 42/820 (5%) Strand=Plus/Minus Query 74470 CGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGA 74529 |||| ||||| ||||| ||||||||||| || ||| |||||||||||||| |||| | Sbjct 1551652 CGACGCGCTTCTCAAAGAAGTTGGTCTTGCCGCCCAGGGAGATGTTCTCCATAAAGTCAA 1551593 Query 74530 AAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAGGCGATCC 74585 | ||||| | ||| | |||||| || | | | ||| ||||| || Sbjct 1551592 AGGGGTTGGACGACTTGTACAC---CTTCTCGTTGCCGAGAGCGA-CCAGCAGGCGGTCG 1551537 Query 74586 GCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGC 74645 || ||||||| |||||||||| |||| | | |||||| | || ||| ||| Sbjct 1551536 GCAACAAATTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCCAGCAGAGCGCAAGGC 1551477 Query 74646 AGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG-GACAATCTTGTGAAT 74704 || |||||||| | ||||| ||| | || | | | | || || | | | || Sbjct 1551476 AGGGCCTCGGTCAGGAACTCCTGCTCGATG-CGGACGGCGTCGGTGATGATGTCGCGGAT 1551418 Query 74705 G---TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCCT 74760 || ||| | || || | ||||||| |||| ||| | || |||||| ||| Sbjct 1551417 CACCTCCTTGCTGGCGCGGTTCT---TCAGGTGGGAGTGCAGCAGGCA-GGCAAAGTCCG 1551362 Query 74761 GATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTC 74820 ||| || || || | || | || || ||||| | ||||| ||||| || | Sbjct 1551361 TGTGCAGACCCTCGTCACGCGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGAC 1551302 Query 74821 CACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACAC 74880 | |||||||| | ||| ||||||| |||| ||| ||||||||||| || ||||| Sbjct 1551301 CCCGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACGG 1551242 Query 74881 ACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCTGA 74936 |||||||| || ||||| || || || || | | ||| ||||| || || Sbjct 1551241 CGGCAAAGGCAACCAGGCGCTGGGCAAA-GGAGGAGTTCTTGTCCTGGATCCA--TCGGA 1551185 Query 74937 --GCCCATTCAGCTTTTCGTTTGACCGCAGGGACAG-TATCGATCGCTTGGAAGAGGCT- 74992 ||||| ||||| || | | | ||| ||| | | || ||||| | ||||||| Sbjct 1551184 TAGCCCAGTCAGCCTT-CTTGCGGATGCAAGGAATGGTCTCAATCGCGTTGAAGAGGTAG 1551126 Query 74993 -TGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAAT 75051 ||| | || | | ||||||| | |||| || | || ||||||||||| || | Sbjct 1551125 CTGCGCTGGCT--GTGCTCCTTGATGTAAGTGTCGATGAGCAGCGAGTACGTCTCGGAGT 1551068 Query 75052 GAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACAT 75111 | || ||| | | |||| | ||||||| | || ||||| | |||||| || | Sbjct 1551067 GTATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCGGGAATCTGGACCT 1551008 Query 75112 C--CTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAA 75169 | | |||| || | | | ||||| ||||||||||||||||||||||||| || Sbjct 1551007 CGCCGCTGAAGCGCTC--GACCAGGTTCTCGTTGACGATGCCGTCCGAGGCGGCGAAGAA 1550950 Query 75170 AGCCAGTACCATTTTGATAAAGTGGCGC---TCATCG-TCAGTGAGTTTGTCCCAATCCT 75225 ||||| | ||| |||| | |||||| |||| | | |||| ||| || | Sbjct 1550949 GGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAG-GCGGTTGTTCCAGTCGT 1550891 Query 75226 TCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||||||| | || |||||||||||| | |||||||| Sbjct 1550890 GCAGGTCCTTGGACAGGTCAATCTCCTCGGCAGTCCAGAA 1550851 Score = 127 bits (140), Expect = 2e-24 Identities = 305/452 (67%), Gaps = 17/452 (4%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | ||||||| || || ||||| || || || |||||||| |||||||| Sbjct 709585 CGCAACAGCTTGCTCGTCGCTCCCATGCCCACTGCCAGCACTTCTCAGATCCTGGGCAAC 709526 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 ||||| |||||||| ||||| |||||||||||| ||| || ||| || |||||| Sbjct 709525 AACGAATGCTTCGAGCCCTACACTTCCAACATCTACCAGCGACGTGTCCTTGCTGGTGAG 709466 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC-C 55662 || | ||||| || ||||||||||| | | | | |||| | | Sbjct 709465 TTCCAGGTTGTCAACCCCTGGCTTCTCAAGGACCTGGTCGACACCGGCCTGTGGTCCGAC 709406 Query 55663 GCAGATCAAGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATT 55717 || || |||| || || |||| |||||| ||| ||||||| || | | Sbjct 709405 GCC-ATGAAGAACCGCATCATTGCCGAGAACGGC---TCCATCCAGAACATCCCCAACAT 709350 Query 55718 CCTCTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776 || | | | |||||| | ||| ||| || |||||||| | ||| ||| || Sbjct 709349 CCCCGAGGACATCAAGGCTCTGTACAAGACCGTCTGGGAGATCTCTCAGC---GTCAAAT 709293 Query 55777 TGAC---ATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 | | ||| || ||||||||||| | |||||||||||||||||| || |||||| Sbjct 709292 CGTCCAGATGGCGGCCGATCGTGGTGCTTTCATCGACCAGTCCCAGTCCCTCAACATCCA 709233 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 |||| || | || | ||| |||| | | | |||||||| ||| |||||| || Sbjct 709232 CATGAAGGACCCCACGATGGGCAAGATCACCAGCATGCACTTCACCGGCTGGAAGCTCGG 709173 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACCC 55925 |||||||| || |||||||| || || |||| Sbjct 709172 TCTCAAGACCGGCATGTACTACCTCCGTACCC 709141 >seq3 Length=4316785 Score = 98.7 bits (108), Expect = 1e-15 Identities = 282/424 (67%), Gaps = 10/424 (2%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||| || || || || |||| |||| ||| |||| ||| ||||| |||| | Sbjct 1858498 CCCGTGCCGATACCGTCGGCGCCATTGATGAGAACCATGGGCAAAATCGGGGCATAAACC 1858439 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTAT--TTCAAAACGGAATTGTC-AGCC 151992 || ||||| | ||| | || || || || || || |||| || || ||| ||| Sbjct 1858438 TCGGGCTCGATCTGCTTGCCATCCTC-AT-ACTGATGCTTCAGGTTGGGATCGTCCAGC- 1858382 Query 151993 GGATCGAATATCCGTCGAGT-CATA-GGACTCAAACGCGTGAAGATGTATCGGGAGCTGG 152050 || |||| | | | | || | ||| || ||||| ||| | || || | ||||| Sbjct 1858381 -GA-CGAAAAGATGGAGCGCGCAAACGGAGACAGGCGCGTAAAGGTATAACGAGGGCTGG 1858324 Query 152051 CCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGA 152110 | || || |||||| || || || | ||||| | || |||||| || | |||| Sbjct 1858323 CAGCGTCGGAGCCACCGGCAAGTCGAGAACCAAAGTTACCGCTGGGCTCCAGCACATTGA 1858264 Query 152111 GGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTT 152170 |||||| | ||||| || | ||||||| | || || ||| || |||| Sbjct 1858263 TGTTGTTCGATCCCACAAAGTCTTGAGCCAGGCCAATGATGGTCTGCTGAAGTGAGGCTT 1858204 Query 152171 CACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGT 152230 |||||||||| || || ||| | | | || ||| || |||| || | | ||||| || Sbjct 1858203 CACCGTGGTGGTAGGCAGTCAGTCCAGAGACGTAACCAGCCAGCTCCACAACCTTTTCGT 1858144 Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 || | || |||| ||||| ||| ||||| | |||||| ||||| || |||| | Sbjct 1858143 CCTTGACCACGTTCCGCTTGAAACATGCGTAGAGCACCTTTCGCTGACCAGGCTTCAGTC 1858084 Query 152291 CGTC 152294 |||| Sbjct 1858083 CGTC 1858080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215911077400