Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7 365 5e-96 seq2 208 9e-49 seq3 131 2e-25 >seq7 Length=2761852 Score = 365 bits (404), Expect = 5e-96 Identities = 1187/1811 (66%), Gaps = 83/1811 (5%) Strand=Plus/Plus Query 79992 CTGATCAACGGGTACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTA 80051 ||||||||||| | | ||| || ||| ||| ||| | || || || ||||| Sbjct 709103 CTGATCAACGG------TGAACTGGATAGGCGCGGCTGCGGCCTGGGTACGGAGGTAGTA 709156 Query 80052 CATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAG 80111 |||||| |||||||| || |||||||||| | |||||| ||| ||| | | Sbjct 709157 CATGCCGGTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCAT 709216 Query 80112 TGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATC 80171 ||||||| || |||| |||||| || ||||| ||||| ||||||||| |||||||| Sbjct 709217 CGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAAGCACCACGATC 709276 Query 80172 TGCCGCCATTTCAATAATT-GACTTTTGTGGAATTTCCCATACTGTACGATACA---CCT 80227 |||||||| | | ||| ||| | | | || ||||| || || |||| ||| Sbjct 709277 GGCCGCCATCTGGACGATTTGACGCT-GAGAGATCTCCCAGACGGTCTTGTACAGAGCCT 709335 Query 80228 TACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGTCCTTTACAATTTGAT 80287 | || | ||||| || |||| | | | | || |||| || |||| ||| Sbjct 709336 T--GATG-TCCTCGGGGATGTTGGGGATGTTCTGGATGGAGCCGTTCTCGGCAAT--GAT 709390 Query 80288 TT--TTCAATTCA-GACGTCCAGACACCAAGCTTGTG-----CAGATCTTTCACAAG--- 80336 ||| |||| | |||| ||| || || ||| ||| || || | ||| Sbjct 709391 GCGGTTC--TTCATGGCGTCG-GACCACAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCA 709447 Query 80337 GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGT 80396 | | ||| || | || |||| || || ||| || ||| | || | ||| | ||| Sbjct 709448 GGGGTTGACAACCTGGA---ACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGT 709504 Query 80397 GTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGG 80456 ||| ||||| || |||||||| || |||||||||| ||||| || || ||||| || Sbjct 709505 GTAGGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGG 709564 Query 80457 GCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC---GCGCAAATCTGA 80513 |||| | || || || | ||||||| |||||| | ||| | | | || | Sbjct 709565 AGCGACGAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCA 709624 Query 80514 C---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCC 80568 | || | || | ||| |||| |||||||||| | ||||| ||||||||| Sbjct 709625 CTCCCACAGGTCGG----AGGGCT-TGACGTCCCACATGTCATACTGCAGGATGCCCTCA 709679 Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGAC 80628 || || || || ||| ||||| |||||||||||||| ||||||| | ||| || Sbjct 709680 GATGCGGGTGATCCCTTGAACGATTCGTACGGGCCCTCAATCTTGGCAATCTCCATGGAA 709739 Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGT 80688 || |||||| || || |||||| ||| |||| |||||||| |||| |||| Sbjct 709740 GCCTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCA 709799 Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748 || || || | || | || | |||| ||||||| || |||||||| |||| Sbjct 709800 GGAGACTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACA 709859 Query 80749 GCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATT 80807 | || || ||||||||| |||| | | || ||||||| | | |||||| ||| Sbjct 709860 CCAATAGGTCGGTGGCGCATGTTGCTGTTGC-GGGCCTCCTGGACAGGGTAATGGTTCAC 709918 Query 80808 ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAA 80867 ||| |||| |||||| ||||| || || ||| || || || ||||| |||| || Sbjct 709919 ATCAATGATGCGGTTGAGGTTACGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAA 709978 Query 80868 GTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCA 80921 |||| | || ||| | || || || || ||| ||| || |||| ||||| Sbjct 709979 GTCGTAGCATCCTTCGTTGTAGTCGACGAAGGCGGGGAGGGCCAGAGAGGCCAAGTTGCA 710038 Query 80922 CACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGA 80978 || || ||||| || ||| | || |||||| ||| || ||||| | ||||| Sbjct 710039 GACAGCAACCTCATCGGGGGCA-CAGT--ACTCGATGATCTCAGTGCAGAGGTTAGAGCT 710095 Query 80979 CTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACAT 81038 || || |||||||| |||||||| |||| |||||| ||||||||| ||| Sbjct 710096 GCGGATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCAT 710155 Query 81039 GTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTT 81098 | | ||| ||||||||||| ||| | || ||||||| || ||| | || | || Sbjct 710156 GAAGGGGTTACCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCG 710215 Query 81099 GACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGC 81158 || ||||||| || ||| | | ||||| |||| | || |||| | Sbjct 710216 GATGGTCTTGCGGCCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTC 710275 Query 81159 ACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGT 81217 |||| | || |||| ||| | ||||| ||||| |||||||| || |||||| || Sbjct 710276 GCCGTAGCAG-TCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAGGT 710334 Query 81218 CGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGC 81277 ||||| ||| ||||||||| || || ||||| ||||| |||||||||||| Sbjct 710335 TCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCG-- 710392 Query 81278 AGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGC 81335 |||||| ||||||| | ||| ||||| ||| | || || ||||| | || ||| || Sbjct 710393 AGCGCGAACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGC 710452 Query 81336 ATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGGCCACCCTGGTT 81389 ||||| ||||| || || | ||| | | || | |||| ||| ||||||| Sbjct 710453 GTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTG---TTGCCGCCCTGGTC 710509 Query 81390 GACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACC 81449 |||||| || ||||| ||| || || |||| ||| ||||| || || | || || Sbjct 710510 GACGTATCGAGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCC 710569 Query 81450 GTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATG 81507 ||| || || | || || || |||| || | | || || || ||| || Sbjct 710570 GTTGGTGCCGGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAA--ACCAATA 710627 Query 81508 CCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATG 81567 ||||| | | ||| || ||| |||||| |||| || || || || ||||| ||| Sbjct 710628 CCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCGTAGATACCCTCAATG 710687 Query 81568 CTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGG 81625 || || | |||||||| | || ||| || |||| || |||||| | | || | Sbjct 710688 CTGTCGTCCTTCATGTCGACCAGGAAGCATGAGGACAGCT--GGGCTTGCGGGGTACCAG 710745 Query 81626 CATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTT 81685 ||||||| || || |||| || || |||| | | | ||||| |||| || || | Sbjct 710746 CATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTGGTATGTCT 710805 Query 81686 CCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACT 81745 | || || ||| ||||| || || || | || || ||||| | ||||| || Sbjct 710806 CGAGAACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATGTGCT 710865 Query 81746 GGGGCGTCTCG 81756 | ||| |||| Sbjct 710866 GTGGCCGCTCG 710876 >seq2 Length=5759010 Score = 208 bits (230), Expect = 9e-49 Identities = 184/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| Sbjct 4160787 ATCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCG 4160728 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| ||||| | || ||||||||||||||||| |||||||| ||| Sbjct 4160727 TCCGACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGAC 4160668 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || ||||| ||||| |||||||||| |||||||| ||||||| Sbjct 4160667 CAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTAC 4160608 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| || || ||||| || ||| | || ||||||||||| Sbjct 4160607 AACATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGCCTTCGCGGTGG 4160558 Score = 185 bits (204), Expect = 1e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| |||||||| ||||||||||| ||| | ||| | Sbjct 4160486 GTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTTGAGTCCTCTGACACCATCGAC 4160427 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| |||||||| |||||||||||||| || Sbjct 4160426 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATC 4160367 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||| | || ||||| | ||||| || |||| ||||| Sbjct 4160366 TTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATCCAGAAGGAG 4160307 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || || ||| | || ||||||||||| Sbjct 4160306 TCCACACTCCACCTCGTCCTCCGCCTTCGCGGTGG 4160272 Score = 167 bits (184), Expect = 3e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || ||||| |||||||| || || || ||| | Sbjct 4160042 ATGCAGATCTTCGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCT 4159983 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || ||||||||||||||||| || ||||| |||||| Sbjct 4159982 GATACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAG 4159923 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || ||||| ||||||||||| || || || | ||| || || ||| ||||| || Sbjct 4159922 CAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGTCGGACTCTGAGC-GACTACAA 4159864 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| |||||| ||||| || | ||||| || ||||| || Sbjct 4159863 CATCCAGAAGGAGAGCACTCTGCATCTGGTTCTCCGTCTCCGTGGTGGCCA 4159813 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 3574378 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 3574437 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 3574438 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3574497 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || ||||| || ||||| |||||||||| || ||||| ||| ||||| || Sbjct 3574498 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 3574556 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| || || || ||| |||| || || ||||| Sbjct 3574557 CATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 3574604 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || |||||||| || || ||||| || ||| Sbjct 4160270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAATCATCC 4160211 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || || |||||||| ||||| ||||| || |||||| Sbjct 4160210 GATACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAG 4160151 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || ||||| ||||||||||| || || || | || || || ||| ||||| || Sbjct 4160150 CAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGC-GACTACAA 4160092 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||| || || | ||| | ||||| || ||||| Sbjct 4160091 CATTCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGTCTCCGTGGTGG 4160044 >seq3 Length=4316785 Score = 131 bits (144), Expect = 2e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || |||||||| || || |||||||| ||||| || | || Sbjct 838277 CTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 838218 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| | Sbjct 838217 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 838158 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || ||||||||||| |||||||||| || ||||| | ||||| || |||| || Sbjct 838157 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAA 838098 Query 27594 GG 27595 || Sbjct 838097 GG 838096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310307324560