Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq7 365 5e-96
seq2 208 9e-49
seq3 131 2e-25
>seq7
Length=2761852
Score = 365 bits (404), Expect = 5e-96
Identities = 1187/1811 (66%), Gaps = 83/1811 (5%)
Strand=Plus/Plus
Query 79992 CTGATCAACGGGTACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTA 80051
||||||||||| | | ||| || ||| ||| ||| | || || || |||||
Sbjct 709103 CTGATCAACGG------TGAACTGGATAGGCGCGGCTGCGGCCTGGGTACGGAGGTAGTA 709156
Query 80052 CATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAG 80111
|||||| |||||||| || |||||||||| | |||||| ||| ||| | |
Sbjct 709157 CATGCCGGTCTTGAGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCAT 709216
Query 80112 TGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATC 80171
||||||| || |||| |||||| || ||||| ||||| ||||||||| ||||||||
Sbjct 709217 CGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGGTCGATGAAAGCACCACGATC 709276
Query 80172 TGCCGCCATTTCAATAATT-GACTTTTGTGGAATTTCCCATACTGTACGATACA---CCT 80227
|||||||| | | ||| ||| | | | || ||||| || || |||| |||
Sbjct 709277 GGCCGCCATCTGGACGATTTGACGCT-GAGAGATCTCCCAGACGGTCTTGTACAGAGCCT 709335
Query 80228 TACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGTCCTTTACAATTTGAT 80287
| || | ||||| || |||| | | | | || |||| || |||| |||
Sbjct 709336 T--GATG-TCCTCGGGGATGTTGGGGATGTTCTGGATGGAGCCGTTCTCGGCAAT--GAT 709390
Query 80288 TT--TTCAATTCA-GACGTCCAGACACCAAGCTTGTG-----CAGATCTTTCACAAG--- 80336
||| |||| | |||| ||| || || ||| ||| || || | |||
Sbjct 709391 GCGGTTC--TTCATGGCGTCG-GACCACAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCA 709447
Query 80337 GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGT 80396
| | ||| || | || |||| || || ||| || ||| | || | ||| | |||
Sbjct 709448 GGGGTTGACAACCTGGA---ACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAAGT 709504
Query 80397 GTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGG 80456
||| ||||| || |||||||| || |||||||||| ||||| || || ||||| ||
Sbjct 709505 GTAGGGCTCGAAGCATTCGTTGTTGCCCAGGATCTGAGAAGTGCTGGCAGTGGGCATGGG 709564
Query 80457 GCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC---GCGCAAATCTGA 80513
|||| | || || || | ||||||| |||||| | ||| | | | || |
Sbjct 709565 AGCGACGAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCA 709624
Query 80514 C---CAAAAATCAACCCCAACGCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCC 80568
| || | || | ||| |||| |||||||||| | ||||| |||||||||
Sbjct 709625 CTCCCACAGGTCGG----AGGGCT-TGACGTCCCACATGTCATACTGCAGGATGCCCTCA 709679
Query 80569 GACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGAC 80628
|| || || || ||| ||||| |||||||||||||| ||||||| | ||| ||
Sbjct 709680 GATGCGGGTGATCCCTTGAACGATTCGTACGGGCCCTCAATCTTGGCAATCTCCATGGAA 709739
Query 80629 TCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGT 80688
|| |||||| || || |||||| ||| |||| |||||||| |||| ||||
Sbjct 709740 GCCTCAAGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCA 709799
Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748
|| || || | || | || | |||| ||||||| || |||||||| ||||
Sbjct 709800 GGAGACTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGAACACCGACA 709859
Query 80749 GCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATT 80807
| || || ||||||||| |||| | | || ||||||| | | |||||| |||
Sbjct 709860 CCAATAGGTCGGTGGCGCATGTTGCTGTTGC-GGGCCTCCTGGACAGGGTAATGGTTCAC 709918
Query 80808 ATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAA 80867
||| |||| |||||| ||||| || || ||| || || || ||||| |||| ||
Sbjct 709919 ATCAATGATGCGGTTGAGGTTACGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAA 709978
Query 80868 GTCGAA------TTGGTTCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCA 80921
|||| | || ||| | || || || || ||| ||| || |||| |||||
Sbjct 709979 GTCGTAGCATCCTTCGTTGTAGTCGACGAAGGCGGGGAGGGCCAGAGAGGCCAAGTTGCA 710038
Query 80922 CACGGCCACCTCTTC---AGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGA 80978
|| || ||||| || ||| | || |||||| ||| || ||||| | |||||
Sbjct 710039 GACAGCAACCTCATCGGGGGCA-CAGT--ACTCGATGATCTCAGTGCAGAGGTTAGAGCT 710095
Query 80979 CTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACAT 81038
|| || |||||||| |||||||| |||| |||||| ||||||||| |||
Sbjct 710096 GCGGATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAGAGCAT 710155
Query 81039 GTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTT 81098
| | ||| ||||||||||| ||| | || ||||||| || ||| | || | ||
Sbjct 710156 GAAGGGGTTACCGGTCTCGGTCTGAGCCTCCAGGATGGAGTACCACAGCTTCTGAGCGCG 710215
Query 81099 GACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGC 81158
|| ||||||| || ||| | | ||||| |||| | || |||| |
Sbjct 710216 GATGGTCTTGCGGCCACGTCCCTCGCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTC 710275
Query 81159 ACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGT 81217
|||| | || |||| ||| | ||||| ||||| |||||||| || |||||| ||
Sbjct 710276 GCCGTAGCAG-TCAGCAAGGCCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAGGT 710334
Query 81218 CGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGC 81277
||||| ||| ||||||||| || || ||||| ||||| ||||||||||||
Sbjct 710335 TCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCACAGGGCAAGGAACAGGTCGCG-- 710392
Query 81278 AGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGC 81335
|||||| ||||||| | ||| ||||| ||| | || || ||||| | || ||| ||
Sbjct 710393 AGCGCGAACCTCCTCCTTACCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGC 710452
Query 81336 ATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCGACGGCCACCCTGGTT 81389
||||| ||||| || || | ||| | | || | |||| ||| |||||||
Sbjct 710453 GTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTG---TTGCCGCCCTGGTC 710509
Query 81390 GACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACC 81449
|||||| || ||||| ||| || || |||| ||| ||||| || || | || ||
Sbjct 710510 GACGTATCGAGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCC 710569
Query 81450 GTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATG 81507
||| || || | || || || |||| || | | || || || ||| ||
Sbjct 710570 GTTGGTGCCGGCAATGTAGGAGCCGGTGGCACGGATGCGGTGGACGTTCAA--ACCAATA 710627
Query 81508 CCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATG 81567
||||| | | ||| || ||| |||||| |||| || || || || ||||| |||
Sbjct 710628 CCACCAGCCATCTTGGAGATCATGGCACACGTCTTCAGAGTGTCGTAGATACCCTCAATG 710687
Query 81568 CTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG--CCGG 81625
|| || | |||||||| | || ||| || |||| || |||||| | | || |
Sbjct 710688 CTGTCGTCCTTCATGTCGACCAGGAAGCATGAGGACAGCT--GGGCTTGCGGGGTACCAG 710745
Query 81626 CATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTT 81685
||||||| || || |||| || || |||| | | | ||||| |||| || || |
Sbjct 710746 CATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAACTTGCTGGACATGAGGTGGTATGTCT 710805
Query 81686 CCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACT 81745
| || || ||| ||||| || || || | || || ||||| | ||||| ||
Sbjct 710806 CGAGAACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATGATCATGTGCT 710865
Query 81746 GGGGCGTCTCG 81756
| ||| ||||
Sbjct 710866 GTGGCCGCTCG 710876
>seq2
Length=5759010
Score = 208 bits (230), Expect = 9e-49
Identities = 184/230 (80%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| || ||||||||||| || || || ||||| |||||
Sbjct 4160787 ATCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCG 4160728
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| ||||| | || ||||||||||||||||| |||||||| |||
Sbjct 4160727 TCCGACACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGAC 4160668
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||||||||| || || ||||| ||||| |||||||||| |||||||| |||||||
Sbjct 4160667 CAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTAC 4160608
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| || || ||||| || ||| | || |||||||||||
Sbjct 4160607 AACATCCAGAAGGAGTCTACCCTTCACCTTGTCCTCCGCCTTCGCGGTGG 4160558
Score = 185 bits (204), Expect = 1e-41
Identities = 170/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||||||||| |||||||| ||||||||||| ||| | ||| |
Sbjct 4160486 GTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTTGAGTCCTCTGACACCATCGAC 4160427
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || || |||||||||||||| |||||||| |||||||||||||| ||
Sbjct 4160426 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCATC 4160367
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| ||||| || ||||| | || ||||| | ||||| || |||| |||||
Sbjct 4160366 TTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATCCAGAAGGAG 4160307
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| || || || ||| | || |||||||||||
Sbjct 4160306 TCCACACTCCACCTCGTCCTCCGCCTTCGCGGTGG 4160272
Score = 167 bits (184), Expect = 3e-36
Identities = 177/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || || || ||||| |||||||| || || || ||| |
Sbjct 4160042 ATGCAGATCTTCGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCT 4159983
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | ||| | || ||||||||||||||||| || ||||| ||||||
Sbjct 4159982 GATACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAG 4159923
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || ||||| ||||||||||| || || || | ||| || || ||| ||||| ||
Sbjct 4159922 CAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGTCGGACTCTGAGC-GACTACAA 4159864
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| |||||| ||||| || | ||||| || ||||| ||
Sbjct 4159863 CATCCAGAAGGAGAGCACTCTGCATCTGGTTCTCCGTCTCCGTGGTGGCCA 4159813
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 3574378 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 3574437
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| || || || ||||||
Sbjct 3574438 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3574497
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || || ||||| || ||||| |||||||||| || ||||| ||| ||||| ||
Sbjct 3574498 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAA 3574556
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||| || || || ||| |||| || || |||||
Sbjct 3574557 CATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 3574604
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || || |||||||| || || ||||| || |||
Sbjct 4160270 ATGCAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAATCATCC 4160211
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || | ||| | || || |||||||| ||||| ||||| || ||||||
Sbjct 4160210 GATACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAG 4160151
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
||||| || ||||| ||||||||||| || || || | || || || ||| ||||| ||
Sbjct 4160150 CAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGC-GACTACAA 4160092
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| ||| || || | ||| | ||||| || |||||
Sbjct 4160091 CATTCAGAAGGAGAGCACCCTGCACTTGGTCCTCCGTCTCCGTGGTGG 4160044
>seq3
Length=4316785
Score = 131 bits (144), Expect = 2e-25
Identities = 138/182 (76%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| || ||||| || || |||||||| || || |||||||| ||||| || | ||
Sbjct 838277 CTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGAT 838218
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
| ||| | ||| | || || |||||||||||||| ||||| || ||||||||||| |
Sbjct 838217 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATT 838158
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || ||||||||||| |||||||||| || ||||| | ||||| || |||| ||
Sbjct 838157 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAA 838098
Query 27594 GG 27595
||
Sbjct 838097 GG 838096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310307324560
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