Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 >seq2 Length=5759010 Score = 123 bits (136), Expect = 2e-23 Identities = 258/379 (68%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141 ||||||||| || || |||||| ||||| |||||||| |||| | ||| || Sbjct 4488031 GTGGCACGGCGGCAGGGCCATGCTCTTGAAGTCGCGCGGGTTCCACGCGCTGAGGATCAT 4487972 Query 30142 GCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCC 30201 |||||||| | |||||| | | | || ||| | |||||| || || || Sbjct 4487971 CCGCCTGTCGTAGGGGTTGGTGCGCAGCTTGTGGACGATCTCGGCCAGCTGGTCGACACC 4487912 Query 30202 CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAA 30261 | | |||| |||||| || | ||| |||||| || || || |||| ||||||||| Sbjct 4487911 CTTGCCCGTGTAGTCAGCGCCGGCGTCGACGTACTCGGCGCCAAAGTGCCGCCACTGGAA 4487852 Query 30262 CCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAA 30321 ||||| || || |||||||| || | || | |||| | ||| |||| | || Sbjct 4487851 GCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGTCAGGCCGACGCTGTCGAGGAA 4487792 Query 30322 GTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCTCAGAGAGCTCTTTG--G 30377 || | ||| |||||| ||||||||||||| || || | || | ||| || ||| | | Sbjct 4487791 CTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCTGAGGGC-CTTGGACG 4487733 Query 30378 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30437 || | || ||||| || |||||| || ||||| | |||||||| ||||| | Sbjct 4487732 AGGTGTTG--CCCTC-GATGAACCAGAGGAGCTCGGCGACGACGGCGCGGAGGAAGACAC 4487676 Query 30438 TCTTGGTCGTGAGGAGGGG 30456 ||| || ||||||||||| Sbjct 4487675 GCTTCGTGGTGAGGAGGGG 4487657 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29839 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTA 29898 ||| || || | ||||| | ||||||||| ||||| || | || | || || | ||| Sbjct 4488331 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTTAAGGGCATCGATGTGGTCGATGTA 4488272 Query 29899 GACGTGAGCGTCTCCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 |||||| |||||||||| | ||| | | || |||||| | || || ||||| | Sbjct 4488271 GACGTGGGCGTCTCCCATGACGTGTGTGAGGCT-TCCCGGCACCAGGTCGCACACGTGGG 4488213 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | | ||||| |||||| || | |||||| || ||||| ||||| | ||||| ||||||| Sbjct 4488212 CGAGCATGTGCGTGAGAAGCGCGTAGCTTGCAATGTTGAAGGGGATGCCGAGGCCCATGT 4488153 Query 30018 CCCCCGACCTCTGGTAGAGCTGACA 30042 | | |||| |||||||||||| || Sbjct 4488152 CGCAGGACCGCTGGTAGAGCTGGCA 4488128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310335625196