Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 3e-14 >seq2 Length=5759010 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| |||| ||||| ||||||||||| || ||||| || || || || || Sbjct 3574595 AGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGG 3574536 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | ||||| |||||||| || | |||||| Sbjct 3574535 CCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 3574476 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || ||| | || ||||| |||||| || | ||| Sbjct 3574475 TTGTCCTGGATC-TTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 3574417 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || || || | || || || ||||||||||| ||| Sbjct 3574416 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 3574374 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||| ||| |||||||||||||| || ||||| || || || || || Sbjct 4159825 AGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGA 4159884 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || ||||| || || || | ||||| ||||| || || | |||||| Sbjct 4159885 CCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCC 4159944 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| || | || ||| | || || || |||||||||| || Sbjct 4159945 TTGTC-CTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGT 4160003 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| || | || || || || |||||||| Sbjct 4160004 AATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||||||||||| |||||||| || || || || || Sbjct 4160053 AGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGG 4160112 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| || || ||||| || || || | ||||| |||||||| || | ||||| Sbjct 4160113 CCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCT 4160172 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 4160173 TTGTCCTGGATCTT 4160186 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| || ||||| || || || || ||||| |||| ||||| || Sbjct 4160296 TGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCAAGCTGC 4160355 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || || ||||| || | |||||| ||||| || || | ||||||||||| |||||| Sbjct 4160356 TTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTT 4160414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729550135029