Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 93.3 4e-14
>seq2
Length=5759010
Score = 93.3 bits (102), Expect = 4e-14
Identities = 157/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695
|||||||||||| || || || | |||||||| | || | || ||||||||||| ||
Sbjct 4488127 CTGCCAGCTCTACCAGCGGTCCTGCGACATGGGCCTCGGCATCCCCTTCAACATTGCAAG 4488186
Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGG 34754
||||| || |||||| ||||| |||| || || ||| | |||| || ||| |||
Sbjct 4488187 CTACGCGCTTCTCACGCACATGCTCGCCCACGT-GTGCGACCTGGTGCC-GGGAAGC-CT 4488243
Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812
|| |||| |||| || || || ||||| | |||||||||| || || ||
Sbjct 4488244 CACACACGTCATGGGAGACGCCCACGTCTACATCGACCACATCGATGCCCTTAAGACACA 4488303
Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTA 34853
||| | || ||||| || ||||||||| |||| | ||||
Sbjct 4488304 GCTCGAGCGCGAGCCGCGGCCGTTCCCCGAGCTGGAGATTA 4488344
Score = 93.3 bits (102), Expect = 4e-14
Identities = 157/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 6492 TAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGA 6551
|||| | |||| ||||||||| || ||||| || | ||||| || || ||||
Sbjct 4488344 TAATCTCCAGCTCGGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTTAAGGGCATCGA 4488285
Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAA 6609
|||||| | ||||| || || || |||| |||| || ||| ||| || ||||
Sbjct 4488284 TGTGGTCGATGTAGACGTGGGCGTCTCCCATGACGTGTGTGAG-GCTTCCC-GGCACCAG 4488227
Query 6610 CCC-CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCA 6668
| ||| || || |||| ||||| |||||| || ||||| || ||||||||||| || |
Sbjct 4488226 GTCGCAC-ACGTGGGCGAGCATGTGCGTGAGAAGCGCGTAGCTTGCAATGTTGAAGGGGA 4488168
Query 6669 CCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709
|| | |||||||| | || || || ||||||||||||
Sbjct 4488167 TGCCGAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCAG 4488127
Score = 91.5 bits (100), Expect = 1e-13
Identities = 207/305 (68%), Gaps = 10/305 (3%)
Strand=Plus/Plus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCC 34380
|| || ||||||||||||| |||| || || || || || ||| |||| || | |
Sbjct 4487756 GGCGTCAAGATCTGGGACGGCAACGGCTCCCGCGAGTTCCTCGAC-AGCGTCGGCCTGAC 4487814
Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440
|| || | |||||| ||||||| |||||||| ||||||||| | |||||||| ||
Sbjct 4487815 GCACCGCGACGTCGGCGACCTGGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTTGGCGC 4487874
Query 34441 GGAGTATCGGGGGAG-CGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499
||||| || | | || || ||||| |||| |||| | |||||||| | ||
Sbjct 4487875 CGAGTA-CGTCGACGCCGGCGCTGACTACACGGGCAAGGGTGTCGACCAGCT---GGCCG 4487930
Query 34500 TGATCGACACCTTGAAGCG---GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556
||||| | | | ||| ||||| | ||||| |||| | | |||||||||
Sbjct 4487931 AGATCGTCCACAAGCTGCGCACCAACCCCTACGACAGGCGGATGATCCTCAGCGCGTGGA 4487990
Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACG 34616
||||| || || ||||| || || |||||||||| || ||| |||||||
Sbjct 4487991 ACCCGCGCGACTTCAAGAGCATGGCCCTGCCGCCGTGCCACATGTTCGCCCAGTTCTACG 4488050
Query 34617 TCGCG 34621
|| ||
Sbjct 4488051 TCTCG 4488055
Score = 91.5 bits (100), Expect = 1e-13
Identities = 207/305 (68%), Gaps = 10/305 (3%)
Strand=Plus/Minus
Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783
|| ||||||||| ||| || |||||||||| || || ||||| || ||
Sbjct 4488055 CGAGACGTAGAACTGGGCGAACATGTGGCACGGCGGCAGGGCCATGCTCTTGAAGTCGCG 4487996
Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTC---CGCTTCAAGGTGTC 6840
|||||||||||||| | | |||| ||||| | ||||| ||| | | | |
Sbjct 4487995 CGGGTTCCACGCGCTGAGGATCATCCGCCTGTCGTAGGGGTTGGTGCGCAGCTTGTGGAC 4487936
Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCG-CTCCCCCGAT 6899
|||| || | |||||||| | |||| |||| ||||| || || | | || |
Sbjct 4487935 GATCTCGGCC---AGCTGGTCGACACCCTTGCCCGTGTAGTCAGCGCCGGCGTCGACG-T 4487880
Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959
|||| || |||||||| | ||||||||| |||||||| ||||||| |||||| | || |
Sbjct 4487879 ACTCGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGC 4487820
Query 6960 GAGATGGGAACCCC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | | || |||| ||| || || || || || |||| |||||||||||||
Sbjct 4487819 GGTGCGTCAGGCCGACGCT-GTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTG 4487761
Query 7019 ACCCC 7023
|| ||
Sbjct 4487760 ACGCC 4487756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448262327157360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |