Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 4e-14 >seq2 Length=5759010 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 |||||||||||| || || || | |||||||| | || | || ||||||||||| || Sbjct 4488127 CTGCCAGCTCTACCAGCGGTCCTGCGACATGGGCCTCGGCATCCCCTTCAACATTGCAAG 4488186 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTGGTTCCTGGGGAGCTGG 34754 ||||| || |||||| ||||| |||| || || ||| | |||| || ||| ||| Sbjct 4488187 CTACGCGCTTCTCACGCACATGCTCGCCCACGT-GTGCGACCTGGTGCC-GGGAAGC-CT 4488243 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || |||| |||| || || || ||||| | |||||||||| || || || Sbjct 4488244 CACACACGTCATGGGAGACGCCCACGTCTACATCGACCACATCGATGCCCTTAAGACACA 4488303 Query 34813 GCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTA 34853 ||| | || ||||| || ||||||||| |||| | |||| Sbjct 4488304 GCTCGAGCGCGAGCCGCGGCCGTTCCCCGAGCTGGAGATTA 4488344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 6492 TAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGA 6551 |||| | |||| ||||||||| || ||||| || | ||||| || || |||| Sbjct 4488344 TAATCTCCAGCTCGGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTTAAGGGCATCGA 4488285 Query 6552 TGTGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAA 6609 |||||| | ||||| || || || |||| |||| || ||| ||| || |||| Sbjct 4488284 TGTGGTCGATGTAGACGTGGGCGTCTCCCATGACGTGTGTGAG-GCTTCCC-GGCACCAG 4488227 Query 6610 CCC-CACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCA 6668 | ||| || || |||| ||||| |||||| || ||||| || ||||||||||| || | Sbjct 4488226 GTCGCAC-ACGTGGGCGAGCATGTGCGTGAGAAGCGCGTAGCTTGCAATGTTGAAGGGGA 4488168 Query 6669 CCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAG 6709 || | |||||||| | || || || |||||||||||| Sbjct 4488167 TGCCGAGGCCCATGTCGCAGGACCGCTGGTAGAGCTGGCAG 4488127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 207/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCG-GGGGTTCCC 34380 || || ||||||||||||| |||| || || || || || ||| |||| || | | Sbjct 4487756 GGCGTCAAGATCTGGGACGGCAACGGCTCCCGCGAGTTCCTCGAC-AGCGTCGGCCTGAC 4487814 Query 34381 ATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGC 34440 || || | |||||| ||||||| |||||||| ||||||||| | |||||||| || Sbjct 4487815 GCACCGCGACGTCGGCGACCTGGGCCCCGTCTACGGCTTCCAGTGGCGGCACTTTGGCGC 4487874 Query 34441 GGAGTATCGGGGGAG-CGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACG 34499 ||||| || | | || || ||||| |||| |||| | |||||||| | || Sbjct 4487875 CGAGTA-CGTCGACGCCGGCGCTGACTACACGGGCAAGGGTGTCGACCAGCT---GGCCG 4487930 Query 34500 TGATCGACACCTTGAAGCG---GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556 ||||| | | | ||| ||||| | ||||| |||| | | ||||||||| Sbjct 4487931 AGATCGTCCACAAGCTGCGCACCAACCCCTACGACAGGCGGATGATCCTCAGCGCGTGGA 4487990 Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACG 34616 ||||| || || ||||| || || |||||||||| || ||| ||||||| Sbjct 4487991 ACCCGCGCGACTTCAAGAGCATGGCCCTGCCGCCGTGCCACATGTTCGCCCAGTTCTACG 4488050 Query 34617 TCGCG 34621 || || Sbjct 4488051 TCTCG 4488055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 207/305 (68%), Gaps = 10/305 (3%) Strand=Plus/Minus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||||||||| ||| || |||||||||| || || ||||| || || Sbjct 4488055 CGAGACGTAGAACTGGGCGAACATGTGGCACGGCGGCAGGGCCATGCTCTTGAAGTCGCG 4487996 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTC---CGCTTCAAGGTGTC 6840 |||||||||||||| | | |||| ||||| | ||||| ||| | | | | Sbjct 4487995 CGGGTTCCACGCGCTGAGGATCATCCGCCTGTCGTAGGGGTTGGTGCGCAGCTTGTGGAC 4487936 Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCG-CTCCCCCGAT 6899 |||| || | |||||||| | |||| |||| ||||| || || | | || | Sbjct 4487935 GATCTCGGCC---AGCTGGTCGACACCCTTGCCCGTGTAGTCAGCGCCGGCGTCGACG-T 4487880 Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 |||| || |||||||| | ||||||||| |||||||| ||||||| |||||| | || | Sbjct 4487879 ACTCGGCGCCAAAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGC 4487820 Query 6960 GAGATGGGAACCCC-CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | || |||| ||| || || || || || |||| ||||||||||||| Sbjct 4487819 GGTGCGTCAGGCCGACGCT-GTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTG 4487761 Query 7019 ACCCC 7023 || || Sbjct 4487760 ACGCC 4487756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262327157360