Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 183 7e-41 seq3 125 2e-23 >seq2 Length=5759010 Score = 183 bits (202), Expect = 7e-41 Identities = 166/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||||| ||||| || |||||||| || |||||||| || || | ||||| Sbjct 4160278 CGAAGGCGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTT 4160337 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| || ||||| || || || ||||||||||||| || Sbjct 4160338 CGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCC 4160397 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||||||| |||||||||||| Sbjct 4160398 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGA 4160457 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 || |||||||| || || || ||||| || Sbjct 4160458 GTAATCGTCTTGCCGGTCAGGGTCTTGAC 4160486 Score = 183 bits (202), Expect = 7e-41 Identities = 173/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | |||||||||||||| || ||||| || |||||||| || || | ||||| Sbjct 4160564 CGAAGGCGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTA 4160623 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || |||||||| || |||||||| || || || ||||||||||||| || Sbjct 4160624 CGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCC 4160683 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| ||||| || ||||||||||| || || |||||||| Sbjct 4160684 TCCTTGTCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGG 4160743 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 4160744 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4160784 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||| ||| || |||||||| || || ||||| | ||||| Sbjct 3574589 AGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 3574530 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 3574529 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 3574470 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| || || ||||| || ||||||||| Sbjct 3574469 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 3574410 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || |||||||| ||||| || || | |||||| || Sbjct 3574409 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 3574375 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || |||||| ||| || |||||||| || || || |||| || ||| Sbjct 4159831 AGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGACCGTCT 4159890 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||| || ||||| || ||||||||||| | || ||||||||| Sbjct 4159891 TCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCC 4159950 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| |||||||| ||||| ||| || || ||||| |||||| Sbjct 4159951 TGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTC 4160010 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 4160011 TTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || ||| ||| || || ||||| || || || || | || ||| Sbjct 4160059 AGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCT 4160118 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || ||||| || ||||| || ||||| || |||| || || |||||| Sbjct 4160119 TCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCC 4160178 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||| || || ||| ||||| || ||||| ||| Sbjct 4160179 TGGATCTTGGACTTGACGTTGTCGATGGTATCGGATGATTCGACCTCCAGGGTGATAGTC 4160238 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | |||||| Sbjct 4160239 TTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270 >seq3 Length=4316785 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || |||||||| || |||||||| Sbjct 838098 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 838157 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || ||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 838158 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 838217 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 838218 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 838276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151806928745