Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq2 96.9 3e-15
>seq2
Length=5759010
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || |||||||| || || || || || ||| || || || |||| ||
Sbjct 4160062 ACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCC 4160121
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| || || || || || || ||||||||||| | ||| | | |||||||||| |
Sbjct 4160122 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGG 4160181
Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|| || |||| ||| | | | |||||| || || || |||| |||||| | ||
Sbjct 4160182 ATCTTGGACTTGA-CGTTGTCGATGGTATCGGATGATTCGACCTCCAGGGTGATAGTCTT 4160240
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||| || || || || || ||||| |||||
Sbjct 4160241 TCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| || || |||||||| || || || || || ||| || || || | || ||
Sbjct 3574586 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCG 3574527
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| ||||| ||||| || || ||||||||||| | ||| | || ||| |||||| |
Sbjct 3574526 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG 3574467
Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|| || |||| ||| | | | || ||| |||||||| || | ||||| | ||
Sbjct 3574466 ATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTT 3574408
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
||||| || || || || || || ||||||||
Sbjct 3574407 CCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 3574375
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
|||| ||| || |||||||| || || || || || ||| || || || |||| ||
Sbjct 4159834 ACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGACCGTCTTCC 4159893
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| || || || || || || ||||||||||| | || | | ||| ||||||
Sbjct 4159894 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGA 4159953
Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
|| || |||| ||| | | | ||||| || ||||| |||| || || | ||
Sbjct 4159954 ATCTTGGACTTGA-CGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTT 4160012
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|||||||| || ||||| ||||| |||||
Sbjct 4160013 ACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545531943869
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |