Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=5759010 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 29611 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTA 29670 ||| || || | ||||| | ||||||||| || | || | || | |||||| | ||| Sbjct 4488331 GGGGAACGGCCGCGGCTCGCGCTCGAGCTGTGTCTTAAGGGCATCGATGTGGTCGATGTA 4488272 Query 29671 GACGTGAGCATCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 |||||| || ||||||| | ||| | | || |||||| | || || ||||| | Sbjct 4488271 GACGTGGGCGTCTCCCATGACGTGTGTGAGGCT-TCCCGGCACCAGGTCGCACACGTGGG 4488213 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | | ||||| |||||| || | |||||| || ||||| ||||| | ||||| ||||||| Sbjct 4488212 CGAGCATGTGCGTGAGAAGCGCGTAGCTTGCAATGTTGAAGGGGATGCCGAGGCCCATGT 4488153 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCA 29814 | | |||| ||||||||||||||| Sbjct 4488152 CGCAGGACCGCTGGTAGAGCTGGCA 4488128 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||| ||||||||| ||||| || || |||||||| || | || | |||| | | Sbjct 4487868 AAGTGCCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGTCAGG 4487809 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC--CTTCT 30134 || |||| | || || | ||| |||||| ||||||||||||| || || | || Sbjct 4487808 CCGACGCTGTCGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCG 4487749 Query 30135 CGGAGAGCTCTTTG--GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30192 | ||| || ||| | ||| | || ||||| || |||||| || ||||| | ||||| Sbjct 4487748 CTGAGGGC-CTTGGACGAGGTGTTG--CCCTC-GATGAACCAGAGGAGCTCGGCGACGAC 4487693 Query 30193 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30228 ||| ||||| | ||| || ||||||||||| Sbjct 4487692 GGCGCGGAGGAAGACACGCTTCGTGGTGAGGAGGGG 4487657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163135648518