Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 seq3 91.5 3e-13 >seq2 Length=5759010 Score = 122 bits (134), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| ||||| |||||||| || ||||||||||| || | | || | ||||| Sbjct 4160572 GAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATC 4160631 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| || |||||||| || | ||||||||| | | || || ||||| Sbjct 4160632 CTCGAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 4160689 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || || ||| | || | | |||| || ||| || || || || || Sbjct 4160690 TCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATG 4160749 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| ||||| ||||||| |||||| Sbjct 4160750 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4160784 Score = 107 bits (118), Expect = 4e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || ||||| ||||| ||| || ||||||||||| ||| | ||| | Sbjct 4159824 GAGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCG 4159883 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || || || ||||| || || | ||||||||| | | ||| || || Sbjct 4159884 ACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTC 4159943 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || ||||| || ||||| | || | | | || || || ||||| ||||| Sbjct 4159944 CTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGT 4160003 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||| || ||||| ||||||| |||||| Sbjct 4160004 AATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||| || ||||||||||| ||| | || | ||||| Sbjct 3574589 AGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 3574530 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | ||||||||||| | ||| || ||||| || Sbjct 3574529 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 3574470 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 3574469 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 3574410 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || |||||||| ||||| ||||| | |||||| || || Sbjct 3574409 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 3574372 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || || || ||||| || ||||||||||| || | | |||| || || Sbjct 4160286 GAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTC 4160345 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||||||||| | | || || ||||| || Sbjct 4160346 CTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 4160405 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| || ||| || || |||||||| || Sbjct 4160406 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATCGT 4160465 Query 152072 TTTGCCCGTGAGAGTCTTCACGA 152094 ||||| || || ||||| |||| Sbjct 4160466 CTTGCCGGTCAGGGTCTTGACGA 4160488 >seq3 Length=4316785 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | |||| ||||| || || || || |||||||| Sbjct 838098 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 838157 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | | ||||||||||| | || || ||||| || || || || |||||| | || Sbjct 838158 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 838217 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||| || ||| || ||||| || || || |||||||| || |||||||||||| Sbjct 838218 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 838277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820607816723