Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq2 122 2e-22
seq3 91.5 3e-13
>seq2
Length=5759010
Score = 122 bits (134), Expect = 2e-22
Identities = 157/215 (73%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| ||||| |||||||| || ||||||||||| || | | || | |||||
Sbjct 4160572 GAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATC 4160631
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
|| || ||||| || |||||||| || | ||||||||| | | || || |||||
Sbjct 4160632 CTCGAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTG 4160689
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
|| ||||| || || ||| | || | | |||| || ||| || || || || ||
Sbjct 4160690 TCCTGAATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATG 4160749
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||||| ||||| ||||| ||||||| ||||||
Sbjct 4160750 GTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4160784
Score = 107 bits (118), Expect = 4e-18
Identities = 155/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || ||||| ||||| ||| || ||||||||||| ||| | ||| |
Sbjct 4159824 GAGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCG 4159883
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| ||||| || || || ||||| || || | ||||||||| | | ||| || ||
Sbjct 4159884 ACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTC 4159943
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || ||||| || ||||| | || | | | || || || ||||| |||||
Sbjct 4159944 CTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGT 4160003
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || || ||||| || ||||| ||||||| ||||||
Sbjct 4160004 AATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042
Score = 105 bits (116), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||| || ||||||||||| ||| | || | |||||
Sbjct 3574589 AGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 3574530
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||| ||||| || | ||||||||||| | ||| || ||||| ||
Sbjct 3574529 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 3574470
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || ||||| | || | | |||| ||| ||| || ||||| || || ||
Sbjct 3574469 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 3574410
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110
|| |||||||| ||||| ||||| | |||||| || ||
Sbjct 3574409 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 3574372
Score = 87.8 bits (96), Expect = 4e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || || || ||||| || ||||||||||| || | | |||| || ||
Sbjct 4160286 GAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTC 4160345
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || || || ||||| || | ||||||||| | | || || ||||| ||
Sbjct 4160346 CTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 4160405
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || ||||| | || | | |||| || ||| || || |||||||| ||
Sbjct 4160406 CTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATCGT 4160465
Query 152072 TTTGCCCGTGAGAGTCTTCACGA 152094
||||| || || ||||| ||||
Sbjct 4160466 CTTGCCGGTCAGGGTCTTGACGA 4160488
>seq3
Length=4316785
Score = 91.5 bits (100), Expect = 3e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| ||||||||||| |||| | |||| ||||| || || || || ||||||||
Sbjct 838098 TTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 838157
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
| | ||||||||||| | || || ||||| || || || || |||||| | ||
Sbjct 838158 AATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 838217
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096
| |||| || ||| || ||||| || || || |||||||| || ||||||||||||
Sbjct 838218 ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 838277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820607816723
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |