Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2 149 5e-31 seq3 105 5e-18 >seq2 Length=5759010 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || |||||||| || ||||||||||| ||||||||||| ||| Sbjct 3574604 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3574545 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| ||||||||||||| |||||||| || | || Sbjct 3574544 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 3574485 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||| | | | |||||||||| || |||||| Sbjct 3574484 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 3574425 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || |||||||| |||||||||||||| ||||| || ||||| Sbjct 3574424 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 3574378 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||| || || ||||||||||| ||||||||||| ||| || || |||| ||| Sbjct 4159834 ACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGAGTCCGACCGTCTTCC 4159893 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || |||| |||||||| || | ||| | ||| ||||| ||| Sbjct 4159894 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGA 4159953 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| || | |||||||| |||| ||||||||||| Sbjct 4159954 ATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTTA 4160013 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || ||||| |||||||| ||||| Sbjct 4160014 CCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||||||||||| || |||||||| ||| || ||| |||| ||| Sbjct 4160062 ACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCGTCTTCC 4160121 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || |||| |||||||| || | || | ||| || || ||| Sbjct 4160122 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATACCCTCTTTGTCCTGG 4160181 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| |||| ||||| ||||||| || || |||||| Sbjct 4160182 ATCTTGGACTTGACGTTGTCGATGGTATCGGATGATTCGACCTCCAGGGTGATAGTCTTT 4160241 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 4160242 CCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||||||||| || | ||| || | || || Sbjct 4160576 ACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTACGGCCATCCTCG 4160635 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||| || | ||| | || ||||| ||| Sbjct 4160636 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGA 4160695 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | |||||||||| || || ||||| | || || ||||| Sbjct 4160696 ATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 4160755 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || ||||||||||| |||||||| ||||||||| Sbjct 4160756 CCGGTGAGGGTCTTGACGAAGATCTGCATGATG 4160788 Score = 120 bits (132), Expect = 2e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| ||||||||||| || | ||| || |||| || Sbjct 4160290 ACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCGTCCTCA 4160349 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | ||||||||| || | ||| | || ||||| ||| Sbjct 4160350 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 4160409 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | ||| || ||||| | ||||||||||| Sbjct 4160410 ATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTAATCGTCTTG 4160469 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || || |||||||| |||| Sbjct 4160470 CCGGTCAGGGTCTTGACGA 4160488 >seq3 Length=4316785 Score = 105 bits (116), Expect = 5e-18 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || || | || || |||||||| || || |||| Sbjct 838096 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 838155 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| || | || | || ||||| ||| ||||| ||| || ||| Sbjct 838156 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 838215 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| ||| || ||||| | || || ||||| ||||| ||||||||||| Sbjct 838216 --CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 838273 Query 44326 GAAG 44329 |||| Sbjct 838274 GAAG 838277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990342964021