Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 150 4e-31 seq3 131 4e-25 >seq2 Length=5759010 Score = 150 bits (166), Expect = 4e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 3574381 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 3574440 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || ||||| ||||||||||| Sbjct 3574441 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 3574500 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || |||||||| ||||| | || || ||| || ||| || Sbjct 3574501 CGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 3574560 Query 178104 CAAAAAGA 178111 || || || Sbjct 3574561 CAGAAGGA 3574568 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 4160781 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 4160722 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || |||||||||||||| || || || ||||| |||||||| Sbjct 4160721 ACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 4160662 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| |||||||| ||||| | || || | || || ||| || Sbjct 4160661 CGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAACATC 4160602 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || ||||| Sbjct 4160601 CAGAAGGAGTCTACCCTTCACCTTGT 4160576 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || ||||| || || || |||||| || || Sbjct 4160039 CAGATCTTCGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCTGAT 4159980 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || |||||||| |||||||| Sbjct 4159979 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAG 4159920 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| ||||| || ||||||| ||| || ||| || Sbjct 4159919 CGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGTCGGACTCTGAGCGACTACAACATC 4159860 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || |||||||| ||| Sbjct 4159859 CAGAAGGAGAGCACTCTGCATCTGGTT 4159833 Score = 136 bits (150), Expect = 1e-26 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||||||||| || |||||||| ||||| ||| || || Sbjct 4160267 CAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAATCATCCGAT 4160208 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| ||||||||||| || || || ||||||||||| Sbjct 4160207 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAGCAG 4160148 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| ||||| || | ||||| ||| || ||| | Sbjct 4160147 CGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACTACAACATT 4160088 Query 178104 CAAAAAGA 178111 || || || Sbjct 4160087 CAGAAGGA 4160080 Score = 125 bits (138), Expect = 2e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || || || || || ||||| || |||||||| || ||| |||||||||| Sbjct 4160488 TCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTTGAGTCCTCTGACACCATCG 4160429 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | |||||||| ||||| |||||||| || || || ||||| |||||||| || || | Sbjct 4160428 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCA 4160369 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| || || || ||||| || || || | || || | || || ||| |||| || | Sbjct 4160368 TCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATCCAGAAGG 4160309 Query 178111 AATCAACACTGCATCTTGT 178129 | || ||||| || || || Sbjct 4160308 AGTCCACACTCCACCTCGT 4160290 >seq3 Length=4316785 Score = 131 bits (144), Expect = 4e-25 Identities = 147/196 (75%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAA--ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 ||||||| | || | |||||||| || || || || || || |||||||| ||||| | Sbjct 838293 AAAATGCGCGAACCAGCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCG 838234 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 | ||| ||||| ||||| || ||||| ||||| |||||||| || || || || | Sbjct 838233 AGTCCTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCC 838174 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 |||||||||| ||| | |||||||| || || |||||||| ||||| | || || ||| Sbjct 838173 CGGACCAGCAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCG 838114 Query 178093 ATTATAACGTCCAAAA 178108 | || ||| |||| || Sbjct 838113 ACTACAACATCCAGAA 838098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730999503522