Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09]
13 sequences; 32,322,684 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2 150 4e-31
seq3 131 4e-25
>seq2
Length=5759010
Score = 150 bits (166), Expect = 4e-31
Identities = 146/188 (78%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || ||||||||||| |||||||| || |||
Sbjct 3574381 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 3574440
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || || ||||| |||||||||||
Sbjct 3574441 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 3574500
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || |||||||| ||||| | || || ||| || ||| ||
Sbjct 3574501 CGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 3574560
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 3574561 CAGAAGGA 3574568
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || || |||||||||||||| || || |||
Sbjct 4160781 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 4160722
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || |||||||||||||| || || || ||||| ||||||||
Sbjct 4160721 ACCATCGACAATGTGAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCAGCAG 4160662
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || |||||||| ||||| |||||||| ||||| | || || | || || ||| ||
Sbjct 4160661 CGTCTCATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCAGACTACAACATC 4160602
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || |||||
Sbjct 4160601 CAGAAGGAGTCTACCCTTCACCTTGT 4160576
Score = 140 bits (154), Expect = 8e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || || ||||| || || || |||||| || ||
Sbjct 4160039 CAGATCTTCGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCTGAT 4159980
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| |||||||||||||| || || |||||||| ||||||||
Sbjct 4159979 ACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAG 4159920
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||||| ||||| || ||||||| ||| || ||| ||
Sbjct 4159919 CGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGTCGGACTCTGAGCGACTACAACATC 4159860
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || || || |||||||| |||
Sbjct 4159859 CAGAAGGAGAGCACTCTGCATCTGGTT 4159833
Score = 136 bits (150), Expect = 1e-26
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||||||||| || |||||||| ||||| ||| || ||
Sbjct 4160267 CAGATCTTCGTCAAGACCCTCACAGGAAAGACTATCACCCTGGAGGTCGAATCATCCGAT 4160208
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| ||||||||||| || || || |||||||||||
Sbjct 4160207 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAAGAGGGTATTCCCCCGGACCAGCAG 4160148
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || ||||| || || ||||| ||||| || | ||||| ||| || ||| |
Sbjct 4160147 CGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTCTGAGCGACTACAACATT 4160088
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 4160087 CAGAAGGA 4160080
Score = 125 bits (138), Expect = 2e-23
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990
|||| || || || || || || ||||| || |||||||| || ||| ||||||||||
Sbjct 4160488 TCGTCAAGACCCTGACCGGCAAGACGATTACTCTCGAGGTTGAGTCCTCTGACACCATCG 4160429
Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050
| |||||||| ||||| |||||||| || || || ||||| |||||||| || || |
Sbjct 4160428 ACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTCA 4160369
Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110
|||| || || || ||||| || || || | || || | || || ||| |||| || |
Sbjct 4160368 TCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCTGACTACAACATCCAGAAGG 4160309
Query 178111 AATCAACACTGCATCTTGT 178129
| || ||||| || || ||
Sbjct 4160308 AGTCCACACTCCACCTCGT 4160290
>seq3
Length=4316785
Score = 131 bits (144), Expect = 4e-25
Identities = 147/196 (75%), Gaps = 2/196 (1%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAA--ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972
||||||| | || | |||||||| || || || || || || |||||||| ||||| |
Sbjct 838293 AAAATGCGCGAACCAGCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCG 838234
Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032
| ||| ||||| ||||| || ||||| ||||| |||||||| || || || || |
Sbjct 838233 AGTCCTCCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCC 838174
Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092
|||||||||| ||| | |||||||| || || |||||||| ||||| | || || |||
Sbjct 838173 CGGACCAGCAGCGATTGATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCG 838114
Query 178093 ATTATAACGTCCAAAA 178108
| || ||| |||| ||
Sbjct 838113 ACTACAACATCCAGAA 838098
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730999503522
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |