Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20koningii_20[genbank_20GCA_5F001950475.1_202016-12-09] 13 sequences; 32,322,684 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2 170 2e-37 seq3 122 8e-23 >seq2 Length=5759010 Score = 170 bits (188), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || |||||||||||||| ||||| |||||| Sbjct 3574604 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 3574545 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || ||||||||||||||||| || ||||||||||| ||||||| ||| Sbjct 3574544 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 3574485 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | |||||| |||||||| Sbjct 3574484 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACTCCAC 3574426 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || ||||| || ||||| || ||||| |||||||||||||| || Sbjct 3574425 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 3574375 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||||||||| |||||||||||||| ||||| |||||| Sbjct 4159815 GCCACCACGGAGACGGAGAACCAGATGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 4159874 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || |||| || |||||||| || ||||| ||||||||||| ||||| | || Sbjct 4159875 CAGAGTCCGACCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCAGGAGG 4159934 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || | | ||| | | | || || || |||| Sbjct 4159935 GATACCCTCCTTGTCC-TGAATCTTGGACTTGACGTTGTCGATGGTATCAGATGATTCCA 4159993 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||| || ||||| ||||||||||| ||||| ||||| |||||||| Sbjct 4159994 CTTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACGAAGATCTGCAT 4160042 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| |||||||||||||||||||| |||||| Sbjct 4160044 CCACCACGGAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 4160103 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || |||||||| || ||||| ||||||||||| ||||||| |||| Sbjct 4160104 AGAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGGGGA 4160163 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| || ||| ||| | | | || ||| || || || Sbjct 4160164 ATACCCTCTTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTATCGGATGATTCGAC 4160222 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || || || ||||| ||||| |||||||| Sbjct 4160223 CTCCAGGGTGATAGTCTTTCCTGTGAGGGTCTTGACGAAGATCTGCAT 4160270 Score = 131 bits (144), Expect = 2e-25 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || || || || ||||||||| ||||| ||||| ||| Sbjct 4160558 CCACCGCGAAGGCGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGAG 4160617 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||||||||| || ||||| || || ||||| ||||| | ||| Sbjct 4160618 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCAGGAGGA 4160677 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| | || | |||| || | | | |||||| |||||| | Sbjct 4160678 ATGCCCTCCTTGTCC-TGAATCTTGGACTTC-ACATTGTCGATGGTGTCGGACGACTCGA 4160735 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || || || || || || || ||||| ||||| ||||||||| Sbjct 4160736 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 4160785 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || || || || ||| ||||||||| ||||| ||||| ||| Sbjct 4160272 CCACCGCGAAGGCGGAGGACGAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGAG 4160331 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||| || || || || ||||| ||||| | ||| Sbjct 4160332 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGAGGA 4160391 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | ||||| ||||| || Sbjct 4160392 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCAGAGGACTCAAC 4160450 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || ||||| || || ||||| ||||| |||| Sbjct 4160451 CTCGAGAGTAATCGTCTTGCCGGTCAGGGTCTTGACGA 4160488 >seq3 Length=4316785 Score = 122 bits (134), Expect = 8e-23 Identities = 138/183 (75%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||||| ||||| || | || ||||||||||| || ||||| | Sbjct 838096 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 838155 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| ||||||| ||||| || |||||||||| ||| || ||| || | Sbjct 838156 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 838215 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||| ||||| ||||| | || || || || |||||||| ||||| || Sbjct 838216 CG--ATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCAC 838273 Query 41851 GAA 41853 ||| Sbjct 838274 GAA 838276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303924875600