Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq371 255 7e-63 >seq371 Length=49181 Score = 255 bits (282), Expect = 7e-63 Identities = 536/804 (67%), Gaps = 80/804 (10%) Strand=Plus/Plus Query 145531 CCCAATTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCA 145590 ||| ||||||| | ||| | |||||| || | | |||||||| ||| |||| | | Sbjct 9161 CCCGATTAGACGGACATGTTCATGGGAATCGACTTGTGGGGGTCGTATCCCTTGACGATA 9220 Query 145591 AAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGG----ATCCTGAGCCT 145646 |||||||| || | || | || ||| | || ||| || | ||| ||| Sbjct 9221 AAGTCCTCGACCTTCCAGCCGTCGATG-CTGCCGCCCTTTTCCCGCGCAATCTCCAGCTC 9279 Query 145647 GGGAAAGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGT 145705 ||| || ||||| || ||| | || ||||| || ||||| ||| | ||||| || || Sbjct 9280 GGGGAACGGCCGCGG-CTCGCGCTCGAGCTGTGTCTGCAGGGCCTCGATGTGGTCGATGT 9338 Query 145706 AGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGG 145765 ||||||||||||| |||| ||||||| ||| | ||| ||| | || | | ||||| Sbjct 9339 AGACGTGCGCGTCTCCCATGACGTGGGTGAGGCTCCCCGGCACCAGATCGCACACGTGGG 9398 Query 145766 CGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGT 145825 ||| ||||| || ||||| | |||||| || ||||||||||| | || |||||||||| Sbjct 9399 CGAGCATGTGCGTGAGCAGCGCGTAGCTCGCAATGTTGAAGGGGATGCCGAGCCCCATGT 9458 Query 145826 CCCCCGAGCGCTGGTACAGCTGGCAG------------------------------GAGA 145855 | | || |||||||||||||||||| ||| Sbjct 9459 CGCAGGACCGCTGGTACAGCTGGCAGTGGAGGTGACCCTTTGGCTTGTTCTCCTCCGAGG 9518 Query 145856 GCTCC------------CCGC-----CCGCC----------ACGTAGAACTGGCACAGGA 145888 ||||| |||| | ||| |||||||||||| | | Sbjct 9519 GCTCCGGGGCGTCGACGCCGCGGCCGCGGCCCGGGTACGAGACGTAGAACTGGGCGAACA 9578 Query 145889 GGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGA 145948 |||||||||||| |||||||| | ||| ||||||||| ||| |||| | | Sbjct 9579 TGTGGCAGGGCGGGAGGGCCATTTTCTTAAAGTCGCGCGGGTTCCACGCGCTGAGTATCA 9638 Query 145949 GCCTCCTGCTCTCGGGGTTCCT------CTTGATCTCCCCTATCAGGTCCCTGAGCTGGT 146002 || |||| | |||||| | |||| | | ||| | || ||||||| Sbjct 9639 TCCGCCTGTCATACGGGTTCGTGCGCAGCTTG---TGGACGATCTCGGCC---AGCTGGT 9692 Query 146003 CCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCC 146062 | ||||||| || ||| || || |||| ||| |||||| |||| || ||||||| || Sbjct 9693 CGACGCCCTTGCCGGCGTAGTCGGTGTTGGCGTCGACGTACTCGGCGCCAAAGTGCCGCC 9752 Query 146063 ACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGG 146122 ||||||| ||||||||||| |||||||| ||| || | |||| |||| ||| | | | Sbjct 9753 ACTGGAAGCCGTAGACGGGGCCCAGGTCGCCGACGTCGCGGTGCGCCAGGCCGACGCTGT 9812 Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC--CCTCGCGGAGAGCTC 146180 ||||||| || ||||| |||||| ||||||||||||||||||| | |||| ||| | | Sbjct 9813 CGAGGAACTCGCGGGAGCCGTTGCCGTCCCAGATCTTGACGCCGACGTCGCTGAGGG--C 9870 Query 146181 ATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAA 146240 ||||| ||| ||| |||||||||||| ||||| ||| ||| | | ||| Sbjct 9871 CTTGGATGAGGTGTTGCCCTCGATGAACCAGAGGAGCTCGGCGATGACGGCGCGGAGGAA 9930 Query 146241 GACCCTCTTGGTGGTCAGCAGGGG 146264 ||| | ||| ||||| || ||||| Sbjct 9931 GACGCGCTTCGTGGTGAGGAGGGG 9954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590070272275400