Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq804 385 5e-102 seq877 152 5e-32 seq373 143 3e-29 seq764 120 3e-22 >seq804 Length=175399 Score = 385 bits (426), Expect = 5e-102 Identities = 575/808 (71%), Gaps = 15/808 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||||||||||||||| || |||||||||| ||||||| | |||||| Sbjct 35701 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 35642 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | ||| ||||||| ||||| | |||||| Sbjct 35641 TCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGATGACGAGAAGTACTTCATCTCT 35582 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | |||||||| ||||||||| |||||||| ||||||||||| ||||||||||| Sbjct 35581 CACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCGC 35522 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | ||||||| || ||||| |||||||| |||||| ||| Sbjct 35521 TTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGCTGCTTTTACGGCTTCCAGATCATGATG 35462 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTTC 116928 |||||| | ||||| || | ||| || ||||||||||| || | | || | Sbjct 35461 GAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTATATCAAGGAGCAC--A 35404 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 | | | | || | | || |||||||| ||||| || || ||| | ||||||| Sbjct 35403 GCCAGCGCAACTAC--CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGC 35346 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGCCTGGTGG 117047 || |||||| | || |||||| | || ||| || |||| | | |||| || || | Sbjct 35345 TGACTGGGCGATTCGATGGATC-CAGGACAAGAACTCGTCCTTTGCCCAGCGTCTCGTTG 35287 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || || |||||||| ||||||| || || ||| |||| || ||||||| Sbjct 35286 CCTTTGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATTTTCTGGCTCA 35227 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || ||||||||||||||||| || ||||||||||||||| | ||||||| Sbjct 35226 AGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGG 35167 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 ||||||| ||||||||||| ||||| | || || | | || | ||| || Sbjct 35166 GTCTGCACACGGACTTTGCCTGCCTGCTGCACTCTCACCTGAAGAACCGCGCCAGCAAGG 35107 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | | | || ||| |||||||||| ||| |||||||||| || | ||||||| Sbjct 35106 AGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTTTTGACCGAAG 35047 Query 117288 CGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | ||||| |||| |||||||| | || | | | ||| ||| ||||| ||||| Sbjct 35046 CTCTGCC-TTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAGCAGTACATTGAGTTT 34988 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||||||| | |||||| | | || | | || ||| ||||| || ||||||| Sbjct 34987 GTCGCCGACCGCCTGCTGGTAGCTCTCGGCAACGAGAAGGTGTACAAGTCGTCCAACCCC 34928 Query 117407 CTGGACTTTATGAACCTCATCTCCTTGG 117434 | ||||||||| | ||| ||| ||| Sbjct 34927 TTTGACTTTATGGAGAACATTTCCCTGG 34900 >seq877 Length=50207 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 31471 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 31530 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || |||| ||||| |||||||||||| |||| Sbjct 31531 TCCGACACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGA 31589 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| || ||||| ||||| || || | |||||||| | |||||| Sbjct 31590 CCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTA 31649 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| ||| || || || || ||||| || | || || Sbjct 31650 CAACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGG 31700 >seq373 Length=44988 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| ||||| | || Sbjct 35859 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 35918 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | ||||| ||||| ||||| |||||||| Sbjct 35919 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 35978 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || ||||| ||||| || |||| || |||||| |||||||||| Sbjct 35979 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAAC 36038 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 36039 ATCCAGAAGGAGTCTACCCTCCACCTGGT 36067 Score = 123 bits (136), Expect = 3e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| || ||||| |||| || || || | |||| | | Sbjct 36155 TCGTCAAGACCCTGACCGGCAAGACGATCACTCTCGAGGTTGAGTCCTCTGACACCATCG 36214 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||| ||||| |||||||||| || ||| Sbjct 36215 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTC 36273 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || |||| || |||||| ||||||||||||||||||| Sbjct 36274 ATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAG 36333 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| | || || || || || Sbjct 36334 GAGTCTACACTCCACCTTGT 36353 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || ||||| | | Sbjct 36373 ATGCAGATTTTCGTCAAGACCCTCACAGGAAAGACCATCACCCTGGAGGTCGAGTCATCT 36432 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || |||| ||||| ||||| || || ||||||| Sbjct 36433 GATACTATTGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 36491 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| || || |||||||| |||| ||||| | | ||||||||| Sbjct 36492 GCAGCGCCTGATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGCACTTTGAGCGACTACAA 36551 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| ||||| Sbjct 36552 CATCCAGAAGGAGAGCACCCTGCA 36575 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || ||||| || || || || | || || ||| | | Sbjct 36601 ATGCAGATCTTTGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCT 36660 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 36661 GATACCATCGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 36719 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || |||||||| |||| || ||| | | ||||||||| Sbjct 36720 GCAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCTTGAGCGACTACAA 36779 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| ||| ||||| || || Sbjct 36780 CATCCAGAAGGAGAGCACTCTGCACCTGGT 36809 >seq764 Length=87966 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| | || ||||| || |||||| | Sbjct 48516 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACACGATC 48457 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| |||||||||| ||| | Sbjct 48456 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGATTG 48397 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || ||||| ||||||||||||||||||| Sbjct 48396 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTGTCCGACTACAACATCCAGAAG 48337 Query 40879 G 40879 | Sbjct 48336 G 48336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213500387600