Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq804 152 1e-31 seq736 113 9e-20 >seq804 Length=175399 Score = 152 bits (168), Expect = 1e-31 Identities = 300/440 (68%), Gaps = 9/440 (2%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| || || || || |||||||| || ||||| || || |||||||||||| Sbjct 35290 GTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATTTTCTGG 35231 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||| || || |||| ||||| ||| |||| ||| | ||| Sbjct 35230 CTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGAC 35171 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACC--- 102094 || ||||| || |||||||| ||| ||||| | || || ||| Sbjct 35170 GAGGGTCTGCACACGGACTTTGCCTGCCTGCTG----CACTCTCACCTGAAGA-ACCGCG 35116 Query 102095 CCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 ||| |||| || ||||| ||| || |||| || |||||||| || || || || ||| Sbjct 35115 CCAGCAAG-GAGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTT 35057 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 | || | | |||||| | |||| ||||||| ||| | |||| |||||| Sbjct 35056 TTGACCGAAGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAGCAGTAC 34997 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTT 102274 ||||| ||||| || || || |||| | | || || ||| || || Sbjct 34996 ATTGAGTTTGTCGCCGACCGCCTGCTGGTAGCTCTCGGCAACGAGAAGGTGTACAAGTCG 34937 Query 102275 ACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAA 102334 |||||||||| || ||||| || |||||||| | ||||||||||| ||||| Sbjct 34936 TCCAACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAACTTCTTTGAG 34877 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 ||| | |||||||| || || Sbjct 34876 AAGCGCGTCGCCGACTACCA 34857 >seq736 Length=134049 Score = 113 bits (124), Expect = 9e-20 Identities = 179/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || ||||| ||||||| || || || | ||| || || ||||| |||||| Sbjct 46855 CCGATGCCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGGGTGTCATAGATACCC 46796 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT 94905 |||||||| || || | | | ||| |||||||| ||||| || |||| | || Sbjct 46795 TCAATGCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTG 46736 Query 94906 CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATAT 94965 ||| ||| || || || ||||| || ||||| || | | || |||||||| | ||| Sbjct 46735 CCAGCATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTGGTAT 46676 Query 94966 GTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATG 95025 || || | |||| | ||||| ||| ||||| || ||||| |||||||||||| Sbjct 46675 GTCTCGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATAATCATG 46616 Query 95026 TCCTGAGGGCGCTCAAC 95042 | || || ||||| || Sbjct 46615 TGTTGTGGCCGCTCGAC 46599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989572779045175