Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq877 93.3 4e-14 seq373 86.0 6e-12 >seq877 Length=50207 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || || ||||| || ||||||| |||| || |||||||| || || ||| | Sbjct 31665 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 31606 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 |||||| || ||||| || || || ||||| || ||||| ||| | || | || | Sbjct 31605 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTGACGT 31547 Query 139693 T-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 | || | ||||||| | ||||||||||| ||| | |||||| || || | || || | Sbjct 31546 TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 31487 Query 139752 CGAATATTTGCAT 139764 |||| || ||||| Sbjct 31486 CGAAAATCTGCAT 31474 >seq373 Length=44988 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| | ||| | |||||||| || || ||||| || ||| | || | ||| || Sbjct 36068 AACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTC 36009 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| |||| ||||| ||||| || ||||| || || || ||||| Sbjct 36008 AAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTG 35949 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || || | | || | ||||||| | ||| ||||| | ||| | ||||| Sbjct 35948 GATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTT 35889 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || || ||||| || ||||| Sbjct 35888 GCCGGTGAGGGTCTTGACGAAGATCTGCAT 35859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496058512292000