Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq804 111 2e-19 >seq804 Length=175399 Score = 111 bits (122), Expect = 2e-19 Identities = 356/547 (65%), Gaps = 14/547 (3%) Strand=Plus/Plus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 |||||||||||| || | | || | ||||||||||| || || |||||||| || || Sbjct 35159 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 35218 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198 ||||| || ||||| || || || ||||| | || |||||||| || || || || Sbjct 35219 TCGCTTCTTGAGCCAGAAAATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACAGC 35278 Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCAC-TGTCATGTATCCACTTTTGA-- 42253 |||||||||| || | || || | || | | |||| || ||||| | || Sbjct 35279 GGCAAAGGCAACGAGACGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCA---TCGAAT 35335 Query 42254 -GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312 ||||| || |||||||| | ||||| || || || ||||| || ||||| ||||| Sbjct 35336 CGCCCAGTCAGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTT 35395 Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAAT 42372 | | || || | ||| || ||||| | || ||| | || || || || Sbjct 35396 GCGCTGGCTGTGCTCCTTGATATAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGAT 35455 Query 42373 GTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGT 42432 ||| || || ||||| || ||||| || || | ||||||| | ||| || || Sbjct 35456 GTTCTCCATCATGATCTGGAAGCCGTAAAAGCAGCGAGCCTCGGGGATCTGGACCTCGCC 35515 Query 42433 ACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 42492 | || || || | | || ||||| || || ||||| ||| || || || |||| Sbjct 35516 GCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAAGGCCAG 35575 Query 42493 TACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCAATCATTGATAT 42548 | || || || || || |||| | ||| | || ||||| || | | | Sbjct 35576 GATGTGAGAGATGAAGTACTTCTCGT-CATCGTTCAGGCGGTTGTTCCAGTCGTGCAGGT 35634 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 | || || | || | || || | ||||| || || || || |||||||| ||||| | Sbjct 35635 CCTTGGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTT 35694 Query 42609 TCCAGAT 42615 |||||| Sbjct 35695 GCCAGAT 35701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131775522600