Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq804 269 4e-67 seq736 168 1e-36 >seq804 Length=175399 Score = 269 bits (298), Expect = 4e-67 Identities = 579/852 (68%), Gaps = 39/852 (5%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||||||||| |||| ||||| ||||| | ||| ||| | || ||| Sbjct 35701 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 35642 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134 |||||||||||| |||| ||| | | || ||| || ||| |||| | || || Sbjct 35641 TCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 35586 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 || ||||| |||||||||| |||| ||| || || || |||||||| || ||| | Sbjct 35585 CTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGA 35526 Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253 || ||| ||| | || || |||| ||| ||||||||||| ||||| |||| Sbjct 35525 GCGCTTCAGCGGCGAGGTCCAGATCCCCGAGG-CTCGCTGCTTTTACGGCTTCCAGATCA 35467 Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313 |||| |||||| | ||||| || | |||||| || || |||| || || || | Sbjct 35466 TGATGGAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTATATCAAGGAGC 35407 Query 125314 ---CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370 || || || || ||||| ||||| || || || | || | || || || | Sbjct 35406 ACAGCCAGCGCAACTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGA 35350 Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430 ||||| | |||| |||||| |||||| | ||| | || || || | ||| | | || | Sbjct 35349 AGGCTGACTGGGCGATTCGATGGATCCAGGACAAGAACTCGTCCTTTGCCCAGCGTCTCG 35290 Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490 | || || ||||| || ||||| |||||||| ||| ||||| |||| || |||| Sbjct 35289 TTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATTTTCTGGC 35230 Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550 |||||||||| || ||||||||||| ||||| |||||| | || ||||| |||| Sbjct 35229 TCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 35170 Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG-AGTGC 125609 |||| || ||| ||||||||| || ||| ||| || || | || | Sbjct 35169 AGGGTCTGCACACGGACTTTGCCTGCCTGCTG------CACTCTC----ACCTGAAGAAC 35120 Query 125610 AGATCCAGCGATGAAAAGGTCAT---CAACATTGTAACCGATGCCGTGAGGATAGAACAA 125666 | ||||| | | |||| || |||| | ||||| ||||| | || || || Sbjct 35119 CGCGCCAGCAAGG---AGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAG 35063 Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726 |||||| | |||||| | || || | | || | |||||||||| ||| || ||| Sbjct 35062 GAGTTTTTGACCGAAGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAG 35003 Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATT 125783 ||||||| |||||||| || || || || ||| || | | ||| || ||| | Sbjct 35002 CAGTACATTGAGTTTGTCGCCGACCGCCTGCTG--GTAGCT-CTCGGCAACGAGAAGGTG 34946 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 ||||| | || |||||||| || ||| | ||| || || | || ||||||||| Sbjct 34945 TACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAAC 34886 Query 125844 TTTTTCGAGAAG 125855 || || |||||| Sbjct 34885 TTCTTTGAGAAG 34874 >seq736 Length=134049 Score = 168 bits (186), Expect = 1e-36 Identities = 354/518 (68%), Gaps = 10/518 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | ||| ||| | | || ||||| || | | ||| || || | || Sbjct 46902 ACCAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCC-CG 46960 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 |||||| ||||| ||||| || || || || || | ||| ||||| | || || || Sbjct 46961 ATACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTG 47020 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| ||||| |||||||| | || | ||||| ||| ||| || |||| || Sbjct 47021 GCACGCCGACGTCTTTGACTTCCTTGATCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 47080 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AAC 97043 ||| | |||||||| ||| || ||| | || ||| | ||||||||||| ||| | Sbjct 47081 CGCCCGCGACTTGTTCCTTGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAA 47140 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 || ||| |||||| || ||||||||| || | || ||||| | || |||| Sbjct 47141 GAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGCCCTGGTCTTGCTGACTGCTAC 47198 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACG 97162 ||||| ||||||||||| |||| |||||| ||||| || ||| |||| Sbjct 47199 GGCGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGGGAGGGACGTGGTCGTAAGACC 47258 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || ||| | |||| |||||| | ||||| || ||| ||| |||||||| | | Sbjct 47259 A-TCCGTGCTC-AGAAGCTGTGGTACTCCATCCTGGAGGCCCAGACCGAGACTGGTAACC 47316 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| || |||||||| | || ||||| |||||||| |||||||||||| Sbjct 47317 CCTTCATGCTTTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACTTGGGCACCA 47376 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 || |||| || || ||||| || || | |||||| Sbjct 47377 TCCGCAGCTCTAACCTCTGCACTGAGATCATTGAGTAC 47414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741051002032600