Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07-
08] 885 sequences; 32,070,663 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq804 269 4e-67
seq736 168 1e-36
>seq804
Length=175399
Score = 269 bits (298), Expect = 4e-67
Identities = 579/852 (68%), Gaps = 39/852 (5%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||||||||| |||| ||||| ||||| | ||| ||| | || |||
Sbjct 35701 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 35642
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAG----AGTTTAT 125134
|||||||||||| |||| ||| | | || ||| || ||| |||| | || ||
Sbjct 35641 TCCAAGGACCTGCACGACTGGAACAACCGCCTGAACGA---TGA-CGAGAAGTACTTCAT 35586
Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194
|| ||||| |||||||||| |||| ||| || || || |||||||| || ||| |
Sbjct 35585 CTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGA 35526
Query 125195 ACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCA 125253
|| ||| ||| | || || |||| ||| ||||||||||| ||||| ||||
Sbjct 35525 GCGCTTCAGCGGCGAGGTCCAGATCCCCGAGG-CTCGCTGCTTTTACGGCTTCCAGATCA 35467
Query 125254 TGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATC 125313
|||| |||||| | ||||| || | |||||| || || |||| || || || |
Sbjct 35466 TGATGGAGAACATCCACTCCGAGACGTACTCCCTGCTCATCGACACTTATATCAAGGAGC 35407
Query 125314 ---CGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAA 125370
|| || || || ||||| ||||| || || || | || | || || || |
Sbjct 35406 ACAGCCAGCGCAACTAC---CTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGA 35350
Query 125371 AGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGG 125430
||||| | |||| |||||| |||||| | ||| | || || || | ||| | | || |
Sbjct 35349 AGGCTGACTGGGCGATTCGATGGATCCAGGACAAGAACTCGTCCTTTGCCCAGCGTCTCG 35290
Query 125431 TGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGC 125490
| || || ||||| || ||||| |||||||| ||| ||||| |||| || ||||
Sbjct 35289 TTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATTTTCTGGC 35230
Query 125491 TCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACG 125550
|||||||||| || ||||||||||| ||||| |||||| | || ||||| ||||
Sbjct 35229 TCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACG 35170
Query 125551 AGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCG-AGTGC 125609
|||| || ||| ||||||||| || ||| ||| || || | || |
Sbjct 35169 AGGGTCTGCACACGGACTTTGCCTGCCTGCTG------CACTCTC----ACCTGAAGAAC 35120
Query 125610 AGATCCAGCGATGAAAAGGTCAT---CAACATTGTAACCGATGCCGTGAGGATAGAACAA 125666
| ||||| | | |||| || |||| | ||||| ||||| | || || ||
Sbjct 35119 CGCGCCAGCAAGG---AGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAG 35063
Query 125667 GAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGC 125726
|||||| | |||||| | || || | | || | |||||||||| ||| || |||
Sbjct 35062 GAGTTTTTGACCGAAGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAG 35003
Query 125727 GAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATT 125783
||||||| |||||||| || || || || ||| || | | ||| || ||| |
Sbjct 35002 CAGTACATTGAGTTTGTCGCCGACCGCCTGCTG--GTAGCT-CTCGGCAACGAGAAGGTG 34946
Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843
||||| | || |||||||| || ||| | ||| || || | || |||||||||
Sbjct 34945 TACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAAC 34886
Query 125844 TTTTTCGAGAAG 125855
|| || ||||||
Sbjct 34885 TTCTTTGAGAAG 34874
>seq736
Length=134049
Score = 168 bits (186), Expect = 1e-36
Identities = 354/518 (68%), Gaps = 10/518 (2%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865
|| ||||||| | ||| ||| | | || ||||| || | | ||| || || | ||
Sbjct 46902 ACCAACGGCACCTCCAACGGCATTATCCCCATGCTGCGAGTCTTCAACAACACTGCC-CG 46960
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
|||||| ||||| ||||| || || || || || | ||| ||||| | || || ||
Sbjct 46961 ATACGTCGACCAGGGTGGCAACAAGCGTCCTGGTGCCTTTGCCATCTACCTCGAGCCCTG 47020
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
|||||| ||||| |||||||| | || | ||||| ||| ||| || |||| ||
Sbjct 47021 GCACGCCGACGTCTTTGACTTCCTTGATCTCCGCAAGAACCACGGCAAGGAGGAGGTTCG 47080
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--AAC 97043
||| | |||||||| ||| || ||| | || ||| | ||||||||||| ||| |
Sbjct 47081 CGCCCGCGACTTGTTCCTTGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTCGAGAA 47140
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
|| ||| |||||| || ||||||||| || | || ||||| | || ||||
Sbjct 47141 GAACTTGG--ACTGGACGCTCATGTGCCCCAACGAATGCCCTGGTCTTGCTGACTGCTAC 47198
Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACG 97162
||||| ||||||||||| |||| |||||| ||||| || ||| ||||
Sbjct 47199 GGCGAGGAGTTTGAGGCTCTGTACGAAAAGTACGAGAGGGAGGGACGTGGTCGTAAGACC 47258
Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
| || ||| | |||| |||||| | ||||| || ||| ||| |||||||| | |
Sbjct 47259 A-TCCGTGCTC-AGAAGCTGTGGTACTCCATCCTGGAGGCCCAGACCGAGACTGGTAACC 47316
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281
| | ||| || |||||||| | || ||||| |||||||| ||||||||||||
Sbjct 47317 CCTTCATGCTTTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACTTGGGCACCA 47376
Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
|| |||| || || ||||| || || | ||||||
Sbjct 47377 TCCGCAGCTCTAACCTCTGCACTGAGATCATTGAGTAC 47414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741051002032600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |