Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq373 111 4e-19 seq877 86.0 1e-11 >seq373 Length=44988 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| | || | ||||||||| || || || |||||||| Sbjct 36791 TCCTTCTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAG 36732 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | ||| || ||||| || || || || || ||||||||||| | || || || Sbjct 36731 ATCAAGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 36672 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | |||||| | ||| || || || ||||| |||||||| || ||||| || ||| Sbjct 36671 TCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACA 36612 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 36611 AAGATCTGCAT 36601 Score = 93.3 bits (102), Expect = 1e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| | ||| | |||||||| || || || ||||| ||| Sbjct 36563 TCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAA 36504 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || ||||| || || || || ||||||||||| | || || || Sbjct 36503 ATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 36444 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||||| | || ||||| || || || ||||| || || || || || || Sbjct 36443 TCAATAGTATCAGATGACTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACG 36384 Query 104549 AATATCTGCAT 104559 || |||||||| Sbjct 36383 AAAATCTGCAT 36373 >seq877 Length=50207 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || ||||| || || ||||| || || | || || || || || || || ||||| Sbjct 31664 TCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAG 31605 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | ||| || || || || || || || || ||||||||||| | || || || Sbjct 31604 ATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTG 31545 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | ||| ||| || || ||||| || || || ||||| || || || || || || Sbjct 31544 TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACG 31485 Query 104549 AATATCTGCATTTTG 104563 || |||||||| ||| Sbjct 31484 AAAATCTGCATCTTG 31470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151385344221580