Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq826 107 3e-19 seq717 104 4e-18 >seq826 Length=55858 Score = 107 bits (118), Expect = 3e-19 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| || || Sbjct 4598 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGCATTACCAAGCCCGCCAT 4540 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| |||||| Sbjct 4539 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCTG 4499 Score = 86.0 bits (94), Expect = 1e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 ||||| | || |||| || |||| |||| ||| | ||| ||||||| || || || Sbjct 4436 CTCTGCAGTGATCTACGAGGAGACCCGTGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCAT 4377 Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATAT 16647 || |||||| || || ||||||||||| || || ||||| ||||| || | || | Sbjct 4376 CCGTGATGCCGTCACATACACCGAGCACGCCAAGCGCAAGACCGTCACATCACTAGACGT 4317 Query 16648 CGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||||| ||||||| || ||||| | | || ||||| || Sbjct 4316 TGTCTATGCCCTGAAACGACAGGGCCGCACCCTGTACGGTTTCGG 4272 >seq717 Length=50147 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || |||||||| || || |||||||| || || Sbjct 32039 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAGGGCATTACCAAGCCTGCCAT 31981 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| || ||||||||||| ||||||||| |||||| Sbjct 31980 CCGACGTCTCGCCCGTCGTGGTGGTGTCAAGCGTATCTCTG 31940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074390838305