Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq736 185 8e-42 seq804 178 1e-39 seq373 134 1e-26 seq877 122 8e-23 seq764 96.9 3e-15 >seq736 Length=134049 Score = 185 bits (204), Expect = 8e-42 Identities = 921/1445 (64%), Gaps = 45/1445 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||| ||||| ||||| || || | ||||| ||| || | ||| || ||| |||| Sbjct 48025 TTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 47966 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | ||||| |||||||| || |||| ||| | || |||||||| || || Sbjct 47965 TCGAAGCATTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGACG 47906 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | || ||||| | ||||||| |||||| | ||||| || | |||| ||||| Sbjct 47905 AGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCAC 47846 Query 145238 AG--CGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTC-GCTGGCGGGG 145294 || || || ||| | |||||||||||||||||||| | || ||||| | || || | Sbjct 47845 AGGTCGGAG--GGCTTGACGTCCCACATGTCGTACTGGAGGATACCCTCAGATGCAGGCG 47788 Query 145295 CTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTC---GCAACTCGCCTCC 145351 | ||||| || || || |||| ||||| | ||| | || || || Sbjct 47787 ATCCCTTG-AACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCATGGAA---GCTTCA 47732 Query 145352 AGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGC-TTCATCG-- 145408 || ||| | ||||| |||||| || ||| |||| ||| |||| | ||| Sbjct 47731 AGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGC----TCGCGAGCCTCGGG 47676 Query 145409 -CTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCC 145467 ||| | |||| ||||| | || || || || || ||||| | || || || Sbjct 47675 AGACTCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGGACACCGACACC 47616 Query 145468 GATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTC 145527 ||| || || || ||||||||| | | ||| ||||| || || | || || Sbjct 47615 GATAGGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTCGACGGGGTAGTGGTTCACATC 47556 Query 145528 GATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTC 145587 ||| || || | ||| || || || ||||| || | | | | ||| | ||||| Sbjct 47555 GATGATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTC 47496 Query 145588 AAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAAC 145647 | | |||||| | | ||| || | ||| | || ||||| || || || Sbjct 47495 GTAGCAGCCCTCGTTGTAGTCGACAAAGGCGGGAAGGGCCAGAGAGGCCAAGTTGCAGAC 47436 Query 145648 TGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATT---GCTACATTT 145704 || ||| |||| | | | ||| | | |||||| | ||| | || ||| | Sbjct 47435 AGCGACCTCGTCGGGGGCACAGTACTCAATGATCTCAGTGCAGAGGTTAGAGCTGC---G 47379 Query 145705 GATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTA 145764 |||||| |||| || | ||| || || || | |||||| ||||||||| |||||| | Sbjct 47378 GATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAAAGCATGAA 47319 Query 145765 CGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCAC 145824 || |||||||| ||| | ||||| ||| | || | ||| ||||| | Sbjct 47318 GGGGTTACCAGTCTCGGTCTGGGCCTCCAGGATGGAGTACCACAGCTTCTGAGCACGGAT 47259 Query 145825 CTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACC 145884 || | || ||||| ||||| || ||| || |||||||| | || Sbjct 47258 GGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGCC 47199 Query 145885 GTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGC 145944 |||||| || | || || || || | |||||| ||||| |||| ||| | ||| Sbjct 47198 GTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGTTCTT 47139 Query 145945 GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTT 146004 | ||| |||| ||| || | ||| || | |||||| || | ||||||||| || Sbjct 47138 CTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAGTCGCGGGC--- 47082 Query 146005 GCAATCCTCAGC--ACCCATGTTTC--GCTTCAAATTAAGCACACTATAGATGTCCGCGT 146060 || | |||| | || || ||| || | || ||| | | ||| ||| |||| Sbjct 47081 GCGAACCTCCTCCTTGCCGTGGTTCTTGC-GGAGATCAAGGAAGTCAAAGACGTCGGCGT 47023 Query 146061 GCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCG---TTTGCCACCCTGGTCCACGT 146117 |||| || || | |||| ||| | ||| || || |||||||||||||| |||| Sbjct 47022 GCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCACCCTGGTCGACGT 46963 Query 146118 GACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCG 146177 || | ||||||| ||||| |||| |||||| | |||| ||| |||||| | Sbjct 46962 ATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGG 46903 Query 146178 TAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCC-G 146236 | | || || ||| || || | || || || |||| |||| || || | Sbjct 46902 TGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACGTTCAGACCGATGCCACCAG 46843 Query 146237 CCGTACTTGGATATAGCGGCGCA-GTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATC 146295 || | |||||| || ||| || ||| | || || || ||||| || |||||||| || Sbjct 46842 CCAT-CTTGGAAATCATGGCACACGTCTTC-AGGGTGTCATAGATACCCTCAATGCTGTC 46785 Query 146296 G--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAG 146353 | |||| ||| | | ||| ||||| ||| ||| ||| || ||| || || || | Sbjct 46784 GTCCTTC--ATGTCCACCAGGAAGCATGAGGACAGCTGGGCTTGCGGGGTGCCAGCATTG 46727 Query 146354 AACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATCCGATACGTTTCGATA 146413 || | || ||| ||||| || || | || | | ||| | | || || |||| Sbjct 46726 AAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTGGTATGTCTCGAGG 46667 Query 146414 GCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGC 146473 | | ||||||||| || ||||| | || || ||||| | ||||||||| ||| Sbjct 46666 ACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATAATCATGTGTTGTGGC 46607 Query 146474 CGCTC 146478 ||||| Sbjct 46606 CGCTC 46602 >seq804 Length=175399 Score = 178 bits (196), Expect = 1e-39 Identities = 360/523 (69%), Gaps = 25/523 (5%) Strand=Plus/Minus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | |||||||| | ||||||||||| |||||| | || | | || Sbjct 35368 ATTCCTTGCATTCGCAAGAAGGCTGACTGGGCGATTCGATGGATCCAGGACAAGAACTCG 35309 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 | || ||| ||||| | || |||||||| ||| ||||| |||| || || Sbjct 35308 TCCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCC 35249 Query 46204 TTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAA 46262 |||||| |||| || | |||| || | ||| | |||||||||||||||| ||| ||| Sbjct 35248 TTTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTC-TCATGCCCGGCCTGACCTTTTCCAA 35190 Query 46263 CGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACA 46321 |||||| || || || |||||||| ||||| ||||||||||| || || || | || Sbjct 35189 CGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGC----ACT 35134 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGA------GCATGTTCAAGGAGG 46375 ||| | || | || ||||| | || | | ||| ||| ||| || | Sbjct 35133 CTCACCTGAAGAAC-----CGCGCCAG-CAAGGAGGTGATTCGTGACATCATCACCGACG 35080 Query 46376 CGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGA 46435 | || ||| ||| |||||||||| || | || ||||| |||||||||||||||| Sbjct 35079 CCGTCCGCATCGAGCAGGAGTTTTTGACCGAAGCTCTGCCTTGCGCCCTGCTGGGCATGA 35020 Query 46436 ACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-T 46494 || | | ||| | ||||| |||||||| || ||||| ||||| || |||| | Sbjct 35019 ACTCCAACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGCCTGCTGGT--AGCTCT 34962 Query 46495 CACCAGC-CGAAGCATTTTCACG-CGCGCAATCCATTTGAGTTTATGAACAACATCTCCC 46552 | || | |||| | | || | || ||| || ||||| |||||| | ||||| |||| Sbjct 34961 CGGCAACGAGAAG-GTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATTTCCC 34903 Query 46553 TGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||| ||||| || || || || || |||||||||| ||| || Sbjct 34902 TGGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCGCCGACTA 34860 >seq373 Length=44988 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| ||| Sbjct 36085 CCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 36026 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | ||||||||||||||||||| Sbjct 36025 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 35966 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | || |||| ||||||| Sbjct 35965 ATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACC 35906 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | ||| || ||||| || || || ||||| |||||||||| Sbjct 35905 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGA 35857 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| |||||| || |||||||| |||||| Sbjct 36599 CCACCACGAAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 36540 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || |||||||| || ||| | || | ||||||||||||||||| Sbjct 36539 AAAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGA 36480 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | |||||| | ||||||| Sbjct 36479 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCAGATGACTCGACC 36420 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || |||||||||||||| Sbjct 36419 TCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATCTGCAT 36373 Score = 113 bits (124), Expect = 4e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | || |||||||| || |||||||| ||| Sbjct 36371 CCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAG 36312 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| || |||| | ||||||||||||||||||| Sbjct 36311 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 36252 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | |||||| | Sbjct 36251 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 36192 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 |||| || | || || ||||| || || || |||| Sbjct 36191 TCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGACGA 36155 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || | || | || |||||| || |||||||| ||||| Sbjct 36828 GCCACCACGGAGACGGAGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCT 36769 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || ||| || |||||||| || || |||| || ||||||||||| || || Sbjct 36768 CAAGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGG 36709 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || ||| ||||| | || | ||||| | || || | Sbjct 36708 GATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGATGATTCCAC 36649 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||||| || || || || || || |||||||| Sbjct 36648 TTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACAAAGATCTGCAT 36601 >seq877 Length=50207 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||| || |||||||| |||||| Sbjct 31700 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 31641 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | |||||||||||||| ||| Sbjct 31640 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 31581 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || |||| ||||| | Sbjct 31580 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 31521 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || |||||||||||||| Sbjct 31520 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31474 >seq764 Length=87966 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| || ||| || ||||| |||||||| || ||| ||| Sbjct 48336 CCTTCTGGATGTTGTAGTCGGACAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 48395 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || |||||||||||||| || || || || ||||| ||| || ||||| | | Sbjct 48396 TCAATCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 48455 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| |||||||| || | ||| | ||| || || || || || || |||| Sbjct 48456 CGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 48515 Query 131225 A 131225 | Sbjct 48516 A 48516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007578358400