Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07-
08] 885 sequences; 32,070,663 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq725 140 2e-28
seq55 100 2e-16
seq373 86.0 4e-12
>seq725
Length=5523
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 4021 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3962
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 3961 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3927
>seq55
Length=15346
Score = 100 bits (110), Expect = 2e-16
Identities = 198/293 (68%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|| || ||||| |||||||| ||| |||||| ||||| | || || || || |||
Sbjct 1831 GATGCCTTCTATCGCTACAAGATGGAACGCATCCAGACCAAGATTGAAGGCAAAGGCAAC 1772
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
|| || || || || | |||||| |||| ||||| || | || | || |||| |
Sbjct 1771 GGCATCAAGACTGTTGTCGTCAACCTGCCCAGCGTCGCCCAGTCCCTTGCCCGTCCTGGC 1712
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
|||| | || || || || | ||| || || |||||||| | |||| | |||
Sbjct 1711 TCCTATGTCATCAAGTACTTTGGTTTCGAGCTCGGTGCTCAGACCAACATTGACCCCAAG 1652
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|||| || | || | ||||| | || | | ||||||||||||||| || ||
Sbjct 1651 GACGACCGTTGGATTATCAACGGCGCCCACGATGCCGCCAAGCTGCAGGACCACCTCGAT 1592
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
||||| || |||||||||||| || | ||| | ||||| ||||||||
Sbjct 1591 GGCTTCATCAACAAGTTTGTGCTCTGCAAAAAGTGCAAGAACCCTGAGACCGA 1539
>seq373
Length=44988
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | |||| || |||||||||||||| || || ||||| || |
Sbjct 36827 CCACCACGGAGACGGAGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 36768
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| ||| |||| || | || || || ||||| || | ||| || || || | |||
Sbjct 36767 AAGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 36708
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || |||||| ||| || ||| || || | || ||||| ||| |||
Sbjct 36707 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGATGATTCCACT 36648
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | ||||| || |||||||||| || || || || ||||||||
Sbjct 36647 TCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACAAAGATCTGCAT 36601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334943587280435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |