Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq725 140 2e-28 seq55 100 2e-16 seq373 86.0 4e-12 >seq725 Length=5523 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4021 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3962 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3961 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3927 >seq55 Length=15346 Score = 100 bits (110), Expect = 2e-16 Identities = 198/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 || || ||||| |||||||| ||| |||||| ||||| | || || || || ||| Sbjct 1831 GATGCCTTCTATCGCTACAAGATGGAACGCATCCAGACCAAGATTGAAGGCAAAGGCAAC 1772 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || || || || | |||||| |||| ||||| || | || | || |||| | Sbjct 1771 GGCATCAAGACTGTTGTCGTCAACCTGCCCAGCGTCGCCCAGTCCCTTGCCCGTCCTGGC 1712 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 |||| | || || || || | ||| || || |||||||| | |||| | ||| Sbjct 1711 TCCTATGTCATCAAGTACTTTGGTTTCGAGCTCGGTGCTCAGACCAACATTGACCCCAAG 1652 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| || | || | ||||| | || | | ||||||||||||||| || || Sbjct 1651 GACGACCGTTGGATTATCAACGGCGCCCACGATGCCGCCAAGCTGCAGGACCACCTCGAT 1592 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || |||||||||||| || | ||| | ||||| |||||||| Sbjct 1591 GGCTTCATCAACAAGTTTGTGCTCTGCAAAAAGTGCAAGAACCCTGAGACCGA 1539 >seq373 Length=44988 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | |||| || |||||||||||||| || || ||||| || | Sbjct 36827 CCACCACGGAGACGGAGAACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 36768 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| |||| || | || || || ||||| || | ||| || || || | ||| Sbjct 36767 AAGGTACGACCGTCTTCCAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCAGGCGGG 36708 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| ||| || ||| || || | || ||||| ||| ||| Sbjct 36707 ATACCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATGGTATCAGATGATTCCACT 36648 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || |||||||||| || || || || |||||||| Sbjct 36647 TCCAGAGTAATCGTCTTACCCGTCAGTGTCTTAACAAAGATCTGCAT 36601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943587280435