Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq804 120 4e-22 >seq804 Length=175399 Score = 120 bits (132), Expect = 4e-22 Identities = 359/547 (66%), Gaps = 14/547 (3%) Strand=Plus/Plus Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 ||| ||||||||||| | | || | ||||||||||| || || |||||||| || || Sbjct 35159 GTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACC 35218 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794 ||||| || ||||| || ||||| ||||| | || ||||| || || || || || Sbjct 35219 TCGCTTCTTGAGCCAGAAAATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACAGC 35278 Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCGC-TGTCATGTATCCACTTTTGA-- 32849 |||||||||| || | || || | || | | |||| || ||||| | || Sbjct 35279 GGCAAAGGCAACGAGACGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCA---TCGAAT 35335 Query 32850 -GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 32908 ||||| || |||||||| | ||||| || ||||| || || || ||||| ||||| Sbjct 35336 CGCCCAGTCAGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTT 35395 Query 32909 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 32968 | | || || | ||| || || || | || ||| | || || || || Sbjct 35396 GCGCTGGCTGTGCTCCTTGATATAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGAT 35455 Query 32969 GTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGT 33028 ||| || || || || || ||||| ||||| | |||||||| ||||| || || Sbjct 35456 GTTCTCCATCATGATCTGGAAGCCGTAAAAGCAGCGAGCCTCGGGGATCTGGACCTCGCC 35515 Query 33029 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 33088 | || || || | | || || || || || ||||| ||| || || || |||| Sbjct 35516 GCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCGAAGAAGGCCAG 35575 Query 33089 TACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCAATCATTGATAT 33144 | || || || || || ||||| | || | | | || ||||| || | | | Sbjct 35576 GATGTGAGAGATGAAGTACTTCTCGTCATCGT-TCAGGCGGTTGTTCCAGTCGTGCAGGT 35634 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | || || | || | || || | ||||| || || ||||| |||||||| ||||| | Sbjct 35635 CCTTGGACAGGTCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTTTTGTACATTT 35694 Query 33205 TCCAGAT 33211 |||||| Sbjct 35695 GCCAGAT 35701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624990446000