Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq877 120 3e-22 seq373 105 6e-18 >seq877 Length=50207 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || ||| |||| ||||| ||||| | Sbjct 31471 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 31530 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || ||||| ||||||||||| || || || || Sbjct 31531 TCCGACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGAC 31590 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||||||||| ||| | |||||| ||||||| | ||| ||| Sbjct 31591 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 31650 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || |||| | || | || |||| |||| || ||| Sbjct 31651 AACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTGCGCCTGCGTGGTGGT 31701 >seq373 Length=44988 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | || Sbjct 35859 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 35918 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || || || |||||||||||||| || || || || Sbjct 35919 GACACCATCGACAATGTGAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAG 35978 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | ||||| ||| ||| ||||||| |||||| Sbjct 35979 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGAACCCTCTCCGACTACAAC 36038 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 36039 ATCCAGAAGGAGTCTACC 36056 Score = 105 bits (116), Expect = 6e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || ||| ||||||| || || || || | || ||| | ||| | |||| Sbjct 36169 ACCGGCAAGACGATCACTCTCGAGGTTGAGTCCTCTGACACCATCGACAACGTCAAGTCC 36228 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || || || || || ||||| || ||||| ||||| Sbjct 36229 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTTGCTGGCAAG 36288 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| ||| ||| ||||||| |||||||| || || || || || Sbjct 36289 CAGCTTGAGGACGGCCGAACCCTCTCCGACTACAACATCCAGAAGGAGTCTAC 36341 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || | || ||||| ||| | ||||| ||||||||| | | Sbjct 36601 ATGCAGATCTTTGTTAAGACACTGACGGGTAAGACGATTACTCTGGAAGTGGAATCATCT 36660 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||| |||||||||||||| || || || || Sbjct 36661 GATACCATCGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 36720 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || ||| | || || || ||| | ||| |||||| Sbjct 36721 CAGCGCTTGATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGTACCTTGAGCGACTACAAC 36780 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 36781 ATCCAGAAGGA 36791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723472840025