Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq703 114 3e-20 seq804 100 6e-16 seq466 96.9 7e-15 seq146 89.7 1e-12 >seq703 Length=42246 Score = 114 bits (126), Expect = 3e-20 Identities = 434/672 (65%), Gaps = 17/672 (3%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||||| || |||||||||||||||||||| ||||| | || ||||| || | Sbjct 20669 GTCGGCTCTCTCTCTGGTGGTTGGAAGATGAAGCTTGCCCTGGCCCGAGCCATGCTCAAG 20728 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 ||||||||||||| ||||| || || || || |||||| ||||| ||||| | ||| Sbjct 20729 GGTGCCGATGTCCTCCTGCTGGACGAACCTACTAACCACTTGGACGTTGCCAACATTGCC 20788 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGA--ATGTTTCTTCCCTCATTGTCTCTCACG 279873 ||||| | | |||||| | |||| | | || | || || || || |||| Sbjct 20789 TGGCTGGAGAACTACCTCA--AGTCGCACCCCGACATTACCAGTCTGATCGTGTCCCACG 20846 Query 279874 ACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGC 279933 ||||||| ||||| || ||| | | | ||| ||||| |||| || ||||| Sbjct 20847 ACTCTGGATTCCTGGACAACGTCACCACCGACATTTACCACTACGAGCCCAACAAGAAGC 20906 Query 279934 TCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAG--CGCCCTGAGGCGGCCGC 279991 || | ||| ||||||||| | || ||||| ||| | ||||| ||||| Sbjct 20907 TCGCTTGCTACAAGGGCAACCTGGCCGCCTTCGT--CAAGGTGCGCCCCGAGGCCAAGAG 20964 Query 279992 CTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGA 280051 |||||| || | ||| | | ||| | |||||| || || | || Sbjct 20965 CTACTACACTCTTTCCGCATCCAATGTCCAGTTCAAGTTCCCTCCTCCGGGTATCCTCAC 21024 Query 280052 GGGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTAT 280109 || |||| || || || || ||||| | | ||| |||||| | | || Sbjct 21025 CGGTATCAAGTCGCAGACCCGTGCCATCATTCGCATGTCCAA--CGTCTCGTACACCTAC 21082 Query 280110 CCCAATGGCCCCAA--CATC--TTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACG 280165 ||| | |||| | || | || || ||| || | || || ||| || Sbjct 21083 CCCGGGGCTTCCAAGCCTTCACTCCACGAG-GTCTCCTGCTCTCTCTCGCTGTCCTCGCG 21141 Query 280166 GATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGG 280225 | | | ||||||||||| |||||||| ||||||||||| ||||| | || || || Sbjct 21142 AGTGGCCATTATTGGACCCAACGGTGCGGGCAAGTCTACCCTGATCAAGCTGCTCACCGG 21201 Query 280226 CGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGT 280285 ||||||| |||| || ||| |||||| |||||| | || || | ||| | Sbjct 21202 CGAGACCATCCCCACCACTGGCAAGGTTGAGAAGCACCCCAACCTCCGAATCGGCTACAT 21261 Query 280286 CGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 | ||||| || | | ||| |||||| |||||||| | ||| || ||||| || | Sbjct 21262 CAAGCAGCATGCCCTGGAACACGTCGAGATGCACCTGGAGAAGACCCCCAACCAGTATCT 21321 Query 280346 TCAGTGGCGCTA 280357 |||||||| || Sbjct 21322 GCAGTGGCGATA 21333 >seq804 Length=175399 Score = 100 bits (110), Expect = 6e-16 Identities = 378/589 (64%), Gaps = 23/589 (4%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | |||||| |||| || || |||||| ||||| |||||||| | Sbjct 34878 TCAAAGAAGTTGGTCTTGCCGCCCAGGGAAATGTTCTCCATAAAGTCAAAGGGGTTGGAC 34937 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | |||||| ||| | ||| || ||||| | | |||||| || |||||||| | Sbjct 34938 GACTTGTACACCTTCTCGTTGCCGAGAGCTACCAGCAGGCGGTCGGCGACAAACTCAATG 34997 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || | ||||||||||| | || ||||| | || || | Sbjct 34998 TACTGCTTCATGAGGTTGGAGTTCATGCCCAGCAGGGCGCAAGGCAGAGCTTCGGTCAAA 35057 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAGAG 251797 || |||| ||| || || || || | || | |||||| ||| | | Sbjct 35058 AACTCCTGCTCGATGCGGACGGCGTCGGTGATGATGTCACGAATCACCTCCTTGCTGGCG 35117 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 ||||| ||| | |||| ||| || | |||| | |||||||||||||| Sbjct 35118 CG-----GTTCTTCAGGTGAGAGTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCCTCGT 35172 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | ||| ||||| ||||||||| | |||||| ||||| | || || ||| |||||| Sbjct 35173 CACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCC 35232 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 |||| || | | ||||| || ||| | | |||||||||| | | ||||| | Sbjct 35233 AGAAAATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGA 35292 Query 251978 GGCGCTCAGCAAACGA------CTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGC 252029 | |||| ||||| || ||||||||| | | ||| || ||||| | || Sbjct 35293 GACGCTGGGCAAAGGACGAGTTCTTGTCCTGGATCCATCGAA--TC---GCCCAGTCAGC 35347 Query 252030 CTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC 252089 |||||| | || || || || || || || | ||||| |||| |||| | | Sbjct 35348 CTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTGTG 35407 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 |||| ||| | || | || || |||||| |||| || |||||| Sbjct 35408 CTCCTTGATATAAGTGTCGATGAGCAGGGAGTACGTCTCGGAGTGGATG 35456 >seq466 Length=80723 Score = 96.9 bits (106), Expect = 7e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || |||| ||||| || || || |||| ||||| ||||| ||| Sbjct 50312 GGTGAGGATCTCTGCAACTGCACCTTCTCTCTTGCCTACGGTGCCAAGATCCTGCTCAAC 50253 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | |||||||||| | || || |||||| ||||||||| || | Sbjct 50252 CAGACCCACCTTCGCCTCAAGCGTGGTCAGCGTTACGGTCTCTGCGGTCCCAACGGTTCC 50193 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||||| ||||| ||||| |||| ||| | || || || ||||| ||| Sbjct 50192 GGCAAGTCTACTCTCATGCGTGCCATCAACAACGAGCAGGTTGAGGGCTTCCCTAA-GCA 50134 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || || | ||| || | || ||||||||| | ||||| Sbjct 50133 GAGCGAAGTCAAGACCGTCTTCGTTGAGCACGACCTTGACTC 50092 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | |||||||| ||||| | | ||||| ||||| || ||||| ||||| | Sbjct 48940 CCAACTTCGGTCTGGATGCCGAGCTGGTTTCCCACTCCCGCATGCGTGGTCTGTCTGGTG 48881 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTT 280790 ||||| ||||| |||| | | || |||| ||||| | || ||| ||||||| Sbjct 48880 GCCAGCGTGTCAAGACTGTCCTGGCTGCTTGCTCA-TGGCAGCGACCCCACTTGATCGTC 48822 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 || ||||||||||||||||| |||||||| || ||||| || ||| Sbjct 48821 CTTGACGAGCCTACCAACTACCTGGACCGTGACTCTCTGGGTGCCCTG 48774 >seq146 Length=52672 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 218587 GATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTGGTT 218646 || || |||||||| ||||| ||| | || | || |||||||| ||| |||| Sbjct 27312 GACGGACTCAAGCCTGGTCAGCGAAAGGTGCTGTACGCATGTTTCAAGCGAAACGTGGTC 27371 Query 218647 CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706 | || ||||| | || | ||||||| || |||| | | ||| |||||| ||| Sbjct 27372 AAGGACGAAAAGGTTGTGGAGCTGGCTGGTTACGTCTCCGGACTGACTGCCTACCACCAC 27431 Query 218707 GGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAAC 218766 ||||| ||||||| |||| | ||| |||| || |||| |||||| ||| Sbjct 27432 GGTGAAGCCTCTCTGCAGCAGACCATCATTGGCCTGGCTCAAGACTTTGTGGGATCGAAC 27491 Query 218767 AACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 ||||| ||| ||||| |||| |||| | ||||||||||| || Sbjct 27492 AACATCAACGTGCTGGAGCCCAGCGGTAACTTTGGTTCTCGACT 27535 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 216928 GAGGGTGTATATATTCCCGAGATGATCTTTGGGCATCTTTTGTCTGGCGAGAACTTTGAT 216987 ||| |||| || ||||||||| |||| || || || || ||| ||||| ||||||||| Sbjct 25554 GAGCGTGTGTACATTCCCGAGCTGATTTTCGGTCACCTGTTGGCTGGCTCCAACTTTGAT 25613 Query 216988 GATACAGAGGAGCGCACCGGAGCTGGTCGCAATGGCTATGGTTCCAAGCTCACCAACATC 217047 || || ||| || || | | |||||| ||||| |||||| | ||||| ||| || Sbjct 25614 GACACCGAGAAGAAGACTGTGGGTGGTCGAAATGGTTATGGTGCGAAGCTGTGTAACGTC 25673 Query 217048 TTCAGCA 217054 ||||||| Sbjct 25674 TTCAGCA 25680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027825145294285