Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq804 192 1e-43 seq877 167 4e-36 seq373 165 2e-35 seq466 109 1e-18 seq703 98.7 2e-15 >seq804 Length=175399 Score = 192 bits (212), Expect = 1e-43 Identities = 569/867 (66%), Gaps = 23/867 (3%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||||||||| || | || || ||| |||||||||| |||||| Sbjct 34839 TTCATGACACCGGCCTTCTGGTAGTCGGCGACGCGCTTCTCAAAGAAGTTGGTCTTGCCG 34898 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCC--AAACTGCTTGGGGT 10050 | ||||||||| |||||| ||||||||||||| | | || | || ||| || Sbjct 34899 CCCAGGGAAATGTTCTCCATAAAGTCAAAGGGGT--TGGACGACTTGTACACCTTCTCGT 34956 Query 10051 AACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCG 10110 ||||| ||| | | |||||| || || ||||| |||||||| |||| |||| | Sbjct 34957 TGCCGAGAGCTACCAGCAGGCGGTCGGCGACAAACTCAATGTACTGCTTCATGAGGTTGG 35016 Query 10111 AGTTCATGCCAATCATGCGGCAGGGGATGGCGTCG--CAAATGAAGTCCTTTTCGTTGGC 10168 |||||||||| | || | ||| || | || ||| |||| || |||| ||| || Sbjct 35017 AGTTCATGCCCAGCAGGGCGCAAGGCAGAGCTTCGGTCAAA--AACTCCTGCTCGATGCG 35074 Query 10169 GACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG--GACAGCTTGTTCTCGAGCTTC 10226 ||| || || || |||| | ||| || | | | || ||||| || | Sbjct 35075 GACGGCGTCGGTGATGATGTCACGAATCACCTCCTTGCTGGC-GC-GGTTCTTCAGGTGA 35132 Query 10227 GAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 || | ||| || |||| | | ||| || |||||||| || ||||| ||||||| Sbjct 35133 GAGTGCAGCAGGCAGGCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTG 35192 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || || ||| ||||||||||| || || || ||||||||||||| | || | Sbjct 35193 GAAAAGGTCAGGCCGGGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAGGCA 35252 Query 10347 CCGGAGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCG 10405 ||| ||| | | |||||| || | |||| ||||| |||| || ||||| | | Sbjct 35253 CCGCTGAAGAAGATACCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGACGAG 35312 Query 10406 GTCGCGCGAAAAGTATTTCGA--GGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTC 10463 || | | |||| ||||| | |||||||| | | | ||| || ||| Sbjct 35313 TTCTTGTCCTGGATCCATCGAATCGCCCAGTCAGCCTTCTTGCGAATGCAAGGAATGGTC 35372 Query 10464 TCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGC 10523 || || || | |||||| | ||| |||| | | | |||| ||| || || | |||| Sbjct 35373 TCAATGGCGTTGAAGAGGTAGTTGCGCTGGCTGTGCTCCTTGATATAAGTGTCGATGAGC 35432 Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGT 10583 |||||||| |||| ||||| | |||| | |||| | |||| || || Sbjct 35433 AGGGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAAAAGCAGCGA 35492 Query 10584 GCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCA 10643 ||| |||| | ||| || || ||| | | ||||||||| | || ||||| Sbjct 35493 GCCTCGGGGATCTGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCG 35552 Query 10644 TCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA-- 10701 || | | || |||||| | |||||||| |||||||| ||| |||||||||| Sbjct 35553 TCCGAGGCGGCGAAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGG 35612 Query 10702 --GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAA 10759 ||| || |||||| || |||| | || | | |||||| |||||||||| Sbjct 35613 CGGTTGTT----CCAGTCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCGGTCCAGAA 35668 Query 10760 AGTGGCAACGGCCTTCTTGTACATCTG 10786 | || ||||||| |||||||| || Sbjct 35669 GGAAGCCTCGGCCTTTTTGTACATTTG 35695 >seq877 Length=50207 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || ||| ||| || |||||||| || ||| Sbjct 31700 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 31641 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | || ||||| || || Sbjct 31640 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 31581 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| ||||||||||| | || || || Sbjct 31580 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 31521 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 31520 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 31474 >seq373 Length=44988 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||| ||| || || ||||| || |||||||| || |||||| Sbjct 36085 CCACCACGAAGGCGGAGAACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 36026 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || ||||| || || Sbjct 36025 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 35966 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||| || ||||||||||| | || || || Sbjct 35965 ATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACC 35906 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || ||||||||||||||||| |||||||| ||| Sbjct 35905 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGATG 35855 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || ||| ||| || |||||||| || ||| Sbjct 36599 CCACCACGAAGACGGAGGACCAAGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 36540 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | |||||| || ||||| || || | || ||||| || ||| Sbjct 36539 AAAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGA 36480 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||||||| || || || || | ||| || || Sbjct 36479 ATACCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTATCAGATGACTCGACC 36420 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| ||||| ||||||||||||||||| |||||||| Sbjct 36419 TCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTGACGAAAATCTGCAT 36373 Score = 140 bits (154), Expect = 6e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| || || ||||| || |||||||| || |||||| Sbjct 36371 CCACCGCGAAGACGGAGGACAAGGTGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAG 36312 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || ||||| || || Sbjct 36311 AGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 36252 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 36251 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCAACC 36192 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||| || || || || ||||||||||||| Sbjct 36191 TCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTGACGA 36155 >seq466 Length=80723 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225818 GGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCG 225877 ||||||||||| | ||| | || || ||||| | || ||| |||||| | ||| Sbjct 50140 GGGAAGCCCTCAACCTGCTCGTTGTTGATGGCACGCATGAGAGTAGACTTGCCGGAACCG 50199 Query 225878 TTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGG 225937 ||||||||| ||| |||||| | | || ||||||| | ||| | || ||| || Sbjct 50200 TTGGGACCGCAGAGACCGTAACGCTGACCACGCTTGAGGCGAAGGTGGGTCTGGTTGAGC 50259 Query 225938 AGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTCG 225997 ||||||||| |||| |||||||| ||||| ||| | ||| || ||||||||||||||| Sbjct 50260 AGGATCTTGGCACCGTAGGCAAGAGAGAAGGTGCAGTTGCAGAGATCCTCACCCTCCTCG 50319 >seq703 Length=42246 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | ||||||||||||||| | |||||||| |||| | || | | Sbjct 21333 TATCGCCACTGCAGATACTGGTTGGGGGTCTTCTCCAGGTGCATCTCGACGTGTTCCAGG 21274 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 |||||||| | ||| | || || | |||||| |||||| || ||| || Sbjct 21273 GCATGCTGCTTGATGTAGCCGATTCGGAGGTTGGGGTGCTTCTCAACCTTGCCAGTGGTG 21214 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | |||||||||||| | |||||| || |||| |||||||||||| ||||| ||| Sbjct 21213 GGGATGGTCTCGCCGGTGAGCAGCTTGATCAGGGTAGACTTGCCCGCACCGTTGGGTCCA 21154 Query 225158 AT 225159 || Sbjct 21153 AT 21152 Score = 96.9 bits (106), Expect = 6e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502 ||| ||||| ||||||||||||||||| || | ||| | | || | | |||| Sbjct 20863 GTCCAGGAATCCAGAGTCGTGGGACACGATCA--GACTGGTAATGTCGGGGTGCGACTTG 20806 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| | ||||| || | |||| ||||||| |||||| |||||||||||||| Sbjct 20805 AGGTAGTTCTCCAGCCAGGCAATGTTGGCAACGTCCAAGTGGTTAGTAGGTTCGTCCAGC 20746 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 || |||| || ||| | |||| ||||| || | || | |||||||| ||||| || Sbjct 20745 AGGAGGACATCGGCACCCTTGAGCATGGCTCGGGCCAGGGCAAGCTTCATCTTCCAACCA 20686 Query 225623 CCGGACAGGGAGCCGA 225638 || || || ||||||| Sbjct 20685 CCAGAGAGAGAGCCGA 20670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921612204552200