Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq736 452 7e-122 seq804 439 5e-118 >seq736 Length=134049 Score = 452 bits (500), Expect = 7e-122 Identities = 1235/1874 (66%), Gaps = 63/1874 (3%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| ||||||||| || || | ||||||| ||| | ||||||||||||||||||||| Sbjct 48367 ACGGTGAACTGGATAGGCGCAGCTGCGGCCTGGGTACGGAGGTAGTACATGCCGGTCTTG 48308 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || |||| || || ||||||| || | ||| |||| || | Sbjct 48307 AGACCGAGCTTCCAGCCGGTGAAGTGCATGCTGGTGATCTTGCCCATCGTGGG------- 48255 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||||| || || ||| ||||||||| |||||||| ||| | | || || Sbjct 48254 --GTCCTT---CATGTGGATGTTTAGGGACTGGGACTGGTCGATGAAAGCACCACGATCA 48200 Query 243917 GCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTG 243976 || ||||| || || | |||||||||||| | | |||||||| | || |||| Sbjct 48199 GCCGCCATCTGGACGATTTGACGCTGAGATATCTCCCAGACGGTCTTGTACAGGGCCTTG 48140 Query 243977 AGGTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGG 244034 | || |||||||| || | |||||||| | ||||| || | | | |||| || Sbjct 48139 ATGTCCTCGGGGATG--TTGGGAATGTTCTGGATGGAGCCGTTCTCGGCAATGATGCGGT 48082 Query 244035 TGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCA 244094 | |||| || ||||||||| | |||| ||| || || ||| | Sbjct 48081 TCTTCATGGCGTCAGACCACAGGCCGGTGTCGACCAGGTCCTTGAGAAGCCAAGGGTTGA 48022 Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 | ||||| ||||| || | || || || |||||||||| |||| | || ||||||| Sbjct 48021 CAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGCTCGA 47962 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 || || |||||||||| ||||| | || || ||||| ||||| || | || |||| Sbjct 47961 AGCATTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGACGAGCA 47902 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274 ||||| | || |||||| || ||| | |||| || ||| ||||||| | Sbjct 47901 AGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCACAGGT 47842 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-GCTGACG 244333 | ||| | | ||| | |||||||||| |||| || | |||| | || | Sbjct 47841 CGGAGGGCT---------TGACGTCCCACATGTCGTACTGGAGGATACCCTCAGATGCAG 47791 Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCG 244393 | | | |||| | | | ||||| || ||| || ||| | || | | || Sbjct 47790 GCGAT-CCCTTGAACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCATGGAAGCTTCA 47732 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453 |||||||| | ||| ||||||||||||||| |||||||| ||||| |||| | | Sbjct 47731 AGGGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGAC 47672 Query 244454 GTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATG 244513 ||||| | | || | ||| |||| || || ||||| || |||| ||||| Sbjct 47671 TCAAAGGGCAGACGCAGAGCGAGGAACGCGTCAGCAAGACCCTGGACACCGACACCGATA 47612 Query 244514 GGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 |||| ||| ||| ||||| | || | || | | |||||||| ||| | ||||| Sbjct 47611 GGTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTCG-ACGGGGTAGTGGTTCACATCGAT 47553 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA 244632 | ||||||||||||| || || | ||| ||| ||| || |||||||| Sbjct 47552 GATGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTA 47493 Query 244633 CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 | || ||||| | || || ||||| || ||||| | ||||| Sbjct 47492 ---GCAGC---CCTCG----TTGTAGTCG--ACAAAGGCGGGAAGGGCCAGAGAGGCCAA 47445 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 ||||||||| || ||||| || | | ||||| | ||||| |||||||||||| Sbjct 47444 GTTGCAGACAGCGACCTCGTCGGGGGCACAGTACTCAATGATCTCAGTGCAGAGGTTAGA 47385 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || ||||||||||| || || || ||| |||| ||||||| ||||||||| || Sbjct 47384 GCTGCGGATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAAAG 47325 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872 ||||||||| || |||||| |||||| | |||| | || ||| || | | ||| Sbjct 47324 CATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCCAGGATGGAGTACCACAGCTTCTGAGC 47265 Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTC 244932 || ||| | ||| | ||||| |||||| |||||| ||||| ||||| Sbjct 47264 ACGGATGGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTC 47205 Query 244933 GGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTCCACTCG 244990 ||| || || | || || ||||| || | ||||||||||| |||| || Sbjct 47204 CTCGCCGTAGCAGTCAGCAAGACCAGGGCATTCGTTG--GGGCACATGAGCGTCCAGTCC 47147 Query 244991 CCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCC 245050 | | || ||| | || ||||||||| ||||||||||| || || |||| | ||| Sbjct 47146 AAGTTCTTCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAGTCG 47087 Query 245051 CTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCG 245110 | || | ||| ||| ||| |||||| | || || | ||||||||||||||| Sbjct 47086 CGGGCGCGAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCG 47027 Query 245111 ACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCC 245170 ||||||||||||| | ||||| || | ||| || || ||||||||||| |||||||| Sbjct 47026 GCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCACCCTGGTCG 46967 Query 245171 ACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 | | | ||| || |||||||| ||||| | || | |||||||| ||| Sbjct 46966 A----CGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGT 46911 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAG 245286 |||||||||||| |||||||| ||| || | | || | | || | || || | Sbjct 46910 GCCGTTGGTGCCGGCGATGTAGGAGCCAGTGGCACGGATGCGGTGGACGTTCAGACCGAT 46851 Query 245287 TCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCAT 245346 || || || |||||| || | ||| || |||| | |||||| || ||||| || Sbjct 46850 GCCACCAGCCATCTTGGAAATCATGGCACACGTCTTCAGGGTGTCATAGATACCCTCAAT 46791 Query 245347 GCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTG-GGGCTGCACG 245405 |||||| |||||||| | ||| ||||| |||||||||| ||||||| ||| ||| | Sbjct 46790 GCTGTCGTCCTTCATGTCCACCAGGAAGCATGAGGACAGCT-GGGCTTGCGGGGTGCCAG 46732 Query 245406 AGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCT 245465 ||||| || || ||| ||||||||| ||| | ||| || | || ||| |||| Sbjct 46731 CATTGAAGAGGGTAGGGGAGGCGTGGGTGAAGAACTTGCTGGACATGAGGTGGTATGTCT 46672 Query 245466 GGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGC 245524 ||| | | || |||| ||| || ||| | ||| ||| | ||| | |||| Sbjct 46671 CGAGGACACGCTCAATGTCGTCTCCCCAGATGCCAACGGC-CACTCGCATAATCATGTGT 46613 Query 245525 TGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTC 245581 || ||| |||| || || ||| | ||| || | ||| || ||||| |||||| Sbjct 46612 TGTGGCCGCTCGACAATCTTGCCGTCGAG---CTTCAGAAGGTATGATCGCTCCAGCGTC 46556 Query 245582 TTGAACCCAAAGTA 245595 ||||| |||||||| Sbjct 46555 TTGAAGCCAAAGTA 46542 >seq804 Length=175399 Score = 439 bits (486), Expect = 5e-118 Identities = 622/861 (72%), Gaps = 30/861 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||| ||||| || ||| ||||||||||||||||||||||||| Sbjct 35701 ATCTGGCAAATGTACAAAAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 35642 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA--GA--ACGAAAAGTTTTTCCTCAA 42415 |||||||| | || |||| | || | |||| || |||| |||| ||| || Sbjct 35641 TCCAAGGACCTGCACGACTGGAACA-ACCGCCTGAACGATGACGAGAAGTACTTCATCTC 35583 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| |||||||||||||||||||| |||||||| ||||| |||||||||| | | Sbjct 35582 TCACATCCTGGCCTTCTTCGCCGCCTCGGACGGCATTGTCAACGAGAACCTGGTCGAGCG 35523 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| | ||||| |||||||| |||||||||||||| || Sbjct 35522 CTTCAGCGGCGAGGTCCAGATCCCCGAGGCTCGCTGCTTTTACGGCTTCCAGATCATGAT 35463 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| |||| || ||||||| |||| || ||| ||| | Sbjct 35462 GGAGAACATCCACTCCGAGACGTACTCC---CTGCTCATCGACACTTATATCAAGGAGCA 35406 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGC 42652 | | |||| ||| || ||||| ||||| ||||| || || ||||| |||||||| Sbjct 35405 CAGCCAGCGCAACTACCTCTTCAACGCCATTGAGACCATTCCTTGCATTCGCAAGAAGGC 35346 Query 42653 GGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGTAG 42711 ||||||||| | |||||| || | | | || | | || | | || | || || | Sbjct 35345 TGACTGGGCGATTCGATGGATCCAG-GACAAGAACTCGTCCTTTGCCCAGCGTCTCGTTG 35287 Query 42712 CCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCA 42771 ||||| |||| |||||||| ||||||||| || ||||| |||||||| |||||||||| Sbjct 35286 CCTTTGCCGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATTTTCTGGCTCA 35227 Query 42772 AGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 || || |||| || |||||||| || ||||| || ||||| |||||| | |||||| Sbjct 35226 AGAAGCGAGGTCTC-ATGCCCGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAG 35168 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCG 42890 || ||||| | ||||||||||||||| ||| ||| ||||| | | || || Sbjct 35167 GGTCTGCACACGGACTTTGCCTGCCTGCTGCACTC---TCACCTGAAGAACCGCGCCAGC 35111 Query 42891 AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACG 42950 |||||| | | || | ||||||||| || ||||| |||||| ||||||| | || Sbjct 35110 AAGGAGGTGATTCGTGACATCATCACCGACGCCGTCCGCATCGAGCAGGAGTTTTTGACC 35051 Query 42951 CAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAG 43010 | | ||||| ||||| | ||||||||| | |||||||| ||||||| || Sbjct 35050 GAAGCTCTGCCTTGCGCCCTGCTGGGCATGAACTCCAACCTCATGAAGCAGTACATTGAG 34991 Query 43011 TACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC--CG----CCTCTACAACACG 43064 | ||||||||| | |||| | | | | |||| || || | ||||| || Sbjct 34990 TTTGTCGCCGAC---CGCCTG---CTGGTAGCTCTCGGCAACGAGAAGGTGTACAAGTCG 34937 Query 43065 CCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAG 43124 | |||||| ||||||||||||||||| || ||| |||||||||||||| || ||| Sbjct 34936 TCCAACCCCTTTGACTTTATGGAGAACATTTCCCTGGGCGGCAAGACCAACTTCTTTGAG 34877 Query 43125 AAGCGCGTCGCCGACTACCAG 43145 ||||||||||||||||||||| Sbjct 34876 AAGCGCGTCGCCGACTACCAG 34856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944328753247600