Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq804 109 1e-18 >seq804 Length=175399 Score = 109 bits (120), Expect = 1e-18 Identities = 181/257 (70%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTG--CGACGCTATTCCATGCC 243559 |||||||| || || || | ||| |||| || |||| ||| ||| | || ||| Sbjct 35092 ATCATCACCGACGCCGTCCGCATCGAGCAGGAGTT--TTTGACCGAAGCTCTGCCTTGCG 35035 Query 243560 GGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619 || | ||||||||||| | |||||| |||||||| || || || ||||||||| Sbjct 35034 CCCTGCTGGGCATGAACTCCAACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGCC 34975 Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 | | | || || || | ||||| |||||||| || |||||||||| |||||||| Sbjct 34974 TGCTGGTAGCTCTCGGCAACGAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATGG 34915 Query 243680 AGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-A 243738 || |||||| || || || || |||||||| || ||||| ||| || || || | Sbjct 34914 AGAACATTTCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCGCCGACTACCAGA 34855 Query 243739 CGCCCTGGTGTGATGAA 243755 | || ||||| ||||| Sbjct 34854 AGGCC-GGTGTCATGAA 34839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102867494374750