Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq736 205 9e-48 seq804 201 1e-46 seq877 114 1e-20 seq373 113 4e-20 >seq736 Length=134049 Score = 205 bits (226), Expect = 9e-48 Identities = 743/1145 (65%), Gaps = 41/1145 (4%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || ||||| || || | || |||| | || | ||| ||| | | Sbjct 48027 GGTTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGG 47968 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| ||||||| ||||| || || |||| || | || || ||||| || | Sbjct 47967 GCTCGAAGCATTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGA 47908 Query 153148 CCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCCC 153207 | | ||| || || | |||||| | || | ||||| | | | ||| |||| Sbjct 47907 CGAGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCC 47848 Query 153208 ACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGGG 153265 |||| | || || | ||| ||||||||||||||| | | || |||| || || Sbjct 47847 ACAGGTCGGAGGGCTTGACGTCCCACATGTCGTACTGGAGGATAC-CCTCAGATGCAGGC 47789 Query 153266 ACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAG 153325 | || || | | ||| ||| ||| | ||| | || | ||| || || Sbjct 47788 GATCCCTTGAACGATTCA-TAGGGGCCCTCGACCTTGGCAATCTCCATGGAAGCTTCAAG 47730 Query 153326 CGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTC 153385 ||| ||| ||| ||||| ||| ||| || || || || || || || ||| Sbjct 47729 GGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTC 47670 Query 153386 GTACGGCATGCGCAGCAGC-ACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 | |||| ||||| ||| | || ||||| || |||||||||| |||||| ||||| | Sbjct 47669 AAAGGGCAGACGCAG-AGCGAGGAACGCGTCAGCAAGACCCTGGACACCGACACCGATAG 47611 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAA 153504 |||| || | ||||||| | || | | | ||| ||||| || |||||| | Sbjct 47610 GTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTCGACGGGGTAGTGGTTCACATCGATGA 47551 Query 153505 TTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGG 153564 | |||||||||||| || ||||| || || | | | ||| |||| ||| || ||| Sbjct 47550 TGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAGC 47491 Query 153565 -----TCATT-TCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGA 153618 || || | |||||| || || | ||| | ||| |||| || |||| Sbjct 47490 AGCCCTCGTTGTAGTCGACAAAGGCGG---GA---AGGGCCAGAGAGGCCAAGTTGCAGA 47437 Query 153619 CGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCATT 153675 | || ||| |||| | | | ||||| | |||||| | ||||||||| ||||| Sbjct 47436 CAGCGACCTCGTCGGGGGCACAGTACTCAATGATCTCAGTGCAGAGGTTAGAGCTGCGG- 47378 Query 153676 TTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGT 153735 ||| |||||| || | ||| ||||| ||||| ||||| ||| ||| | |||||| Sbjct 47377 --ATGGTGCCCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAAAGCATGA 47320 Query 153736 ACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATGCAGGTCCTGCGCTCGCA 153795 | || || |||||| || | || | ||| | ||| | ||| || || | Sbjct 47319 AGGGGTTACCAGTCTCGGTCTGGGCCTCCAGGATGGAGTACCACAGCTTCTGAGCACGGA 47260 Query 153796 CCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGC 153855 || ||| || ||||| |||||||| |||||||| ||||||||| |||| Sbjct 47259 TGGTCTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTCGC 47200 Query 153856 CGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCA---CATATCGT 153912 |||||||||| || || || || || | | || ||||| |||| ||| || | | Sbjct 47199 CGTAGCAGTCAGCAAGACCAGGGCATTCGTTGGGGCACATGAGCGTCCAGTCCAAGT--T 47142 Query 153913 CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCG 153972 | | | ||| || |||||| ||||| || | ||| || || | | |||||| | Sbjct 47141 CTTC-TCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAGTCGCGGG 47083 Query 153973 CCTTGCAATCCTCCGCGC--CCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCG 154028 | || | ||||| | || || | | || | |||| || | | | ||| |||| Sbjct 47082 C---GCGAACCTCCTCCTTGCCGTGGTTC-TTGCGGAGATCAAGGAAGTCAAAGACGTCG 47027 Query 154029 GCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCG 154085 ||||||||||| || | ||||| ||| | |||||| |||||| || ||||| ||| Sbjct 47026 GCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTGTTGCCACCCTGGTCG 46967 Query 154086 ACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCG 154145 |||| || | | ||||||||||| |||| |||||| | |||| | | ||||||| Sbjct 46966 ACGTATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCG 46907 Query 154146 TTGGT 154150 ||||| Sbjct 46906 TTGGT 46902 >seq804 Length=175399 Score = 201 bits (222), Expect = 1e-46 Identities = 514/767 (67%), Gaps = 33/767 (4%) Strand=Plus/Minus Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145 |||||||||||| || || ||| ||| | |||| |||||||||||| | || || Sbjct 35608 AACGATGACGAGAAGTACTTCATCTCTCACATCCTGGCCTTCTTCGCCGCCTCGGACGGC 35549 Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGCAGCGGAACGTTCCGGAACTC-GAGGCGCA 52204 || || ||| ||||| ||||| | | |||||| | ||| || | | ||||| | Sbjct 35548 ATTGTCAACGAGAACCTGGTCGAGCGCTT-CAGCGGCGAGGTCCAGATCCCCGAGGCTCG 35490 Query 52205 ATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTGCT 52264 | |||||| || || | | || ||| | | ||| | |||| |||| ||||| Sbjct 35489 CTGCTTTTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACGTACTCCCTGCT 35430 Query 52265 CATTGAGCAGCTGATAAAAGATGAGCACG---AGCGCGACACGCTGCTGAATGCGTTCGA 52321 ||| || || || ||| | | |||||| ||||| || || | || || | || Sbjct 35429 CATCGA-CA-CTTATATCA-AGGAGCACAGCCAGCGCAACTACCTCTTCAACGCCATTGA 35373 Query 52322 GCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACAC 52381 | | | || ||| ||||||| |||||| | ||||| || |||||| || | | | Sbjct 35372 GACCATTCCTTGCATTCGCAAGAAGGCTGACTGGGCGATTCGATGGATCCAGGACAAGAA 35313 Query 52382 CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGG 52441 | | | | ||| |||| | || ||||| ||| |||||||| | || || ||| Sbjct 35312 CTCGTCCTTTGCCCAGCGTCTCGTTGCCTTTGCCGCTGTCGAGGGTATCTTCTTCAGCGG 35253 Query 52442 CAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAG 52501 ||||||| |||| || | | || | | ||| | |||||||||||||| || Sbjct 35252 TGCCTTTGCCTCCATTTTCTGGCTCAAGAAGCGAGGTCTCATGCCCGGCCTGACCTTTTC 35193 Query 52502 CAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CT--ACT- 52557 ||||||| | || || || ||||| || ||||||||||||||||| ||||| || ||| Sbjct 35192 CAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACGGACTTTGCCTGCCTGCTGCACTC 35133 Query 52558 --AC---AAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAA 52612 || |||| |||| | | || | |||||| ||| ||| ||| Sbjct 35132 TCACCTGAAGAACCGCGCCAGC-AAGGAGGTGATTCG----------TGA-CATCATCAC 35085 Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 || || || ||||| |||||||||| || | || ||||| || |||||||| Sbjct 35084 CGACGCCGTCCGCATCGAGCAGGAGTTTTTGACCGAAGCTCTGCCTTGCGCCCTGCTGGG 35025 Query 52673 CATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCA 52732 ||||||| | | |||| ||||||| |||||||| || || || ||| |||| | Sbjct 35024 CATGAACTCCAACCTCATGAAGCAGTACATTGAGTTTGTCGCCGACCGCCTGCTGGT--A 34967 Query 52733 GCTC-GGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790 |||| |||| | | ||| | ||| | ||| || ||||| |||||| | |||||| Sbjct 34966 GCTCTCGGCAACGAGAAGGTGTACAAGTCGTCCAACCCCTTTGACTTTATGGAGAACATT 34907 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || || | |||||||||||||| || |||||||| |||| ||| || Sbjct 34906 TCCCTGGGCGGCAAGACCAACTTCTTTGAGAAGCGCGTCGCCGACTA 34860 >seq877 Length=50207 Score = 114 bits (126), Expect = 1e-20 Identities = 144/194 (74%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| || || |||||||| || || |||| | | Sbjct 31665 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 31606 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| || ||||| |||||||| || || || || ||||| ||| | || | || | | Sbjct 31605 GATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGACTTGACGT 31547 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||||| ||||||||||| | || | ||| || || || || || || Sbjct 31546 TG-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTG 31488 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 31487 ACGAAAATCTGCAT 31474 >seq373 Length=44988 Score = 113 bits (124), Expect = 4e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||| || || || || | | Sbjct 36052 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCA 35993 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||||||||| ||||| || ||||| ||| || || | | Sbjct 35992 AAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACA 35933 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| |||||| ||||||| || | || || || || || || || Sbjct 35932 TTG-TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 35874 Query 138600 TACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 35873 GACGAAGATCTGCATG 35858 Score = 102 bits (112), Expect = 8e-17 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| ||||| ||| || || || ||||| | | | Sbjct 36792 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTACGACCGTCTTCCAGCTGCTTACCAGCAAA 36733 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| | ||||| ||||| || || ||||| || ||||| ||| | || | || | | Sbjct 36732 GATCAAGCGCTGCTGGTCAGGCGGGATACCCTCCTTGTC-CTGAATCTTCGACTTGACGT 36674 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||| || | || ||||| || | || | ||| ||||| ||||| || || Sbjct 36673 TG-TCGATGGTATCAGATGATTCCACTTCCAGAGTAATCGTCTTACCCGTCAGTGTCTTA 36615 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 36614 ACAAAGATCTGCAT 36601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || |||||| || || || || | | Sbjct 36338 GACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCAAGCTGCTTGCCAGCA 36279 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||||||||| ||||| || ||||| ||| || || | Sbjct 36278 AAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACG 36219 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||||| || | ||| || || ||||| || || Sbjct 36218 TTGTCGATGGTGTCAGAGGACTCAACCTCGAGAGTGATCGTCTTGCCGGTCAGGGTCTTG 36159 Query 138601 AC 138602 || Sbjct 36158 AC 36157 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||||||| ||| || ||| || || || ||||| | | Sbjct 36564 CTCCTTCTGGATGTTGTAGTCGCTCAAAGTGCGGCCGTCTTCCAGCTGCTTACCAGCGAA 36505 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 || || ||||| ||||||||||| ||||| || ||||| ||| | || | || | | Sbjct 36504 AATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTC-CTGAATCTTGGACTTGACGT 36446 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | || || | ||||| ||||| | || | || || || || || || || Sbjct 36445 TG-TCAATAGTATCAGATGACTCGACCTCCAGGGTGATGGTCTTTCCTGTGAGGGTCTTG 36387 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 36386 ACGAAAATCTGCAT 36373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256910097200