Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichoderma_20parareesei_20[genbank_20GCA_5F001050175.1_202015-07- 08] 885 sequences; 32,070,663 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq736 215 6e-51 seq804 123 3e-23 seq710 95.1 1e-14 >seq736 Length=134049 Score = 215 bits (238), Expect = 6e-51 Identities = 967/1506 (64%), Gaps = 47/1506 (3%) Strand=Plus/Minus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| |||||||| || ||| |||| | | |||||||||| ||||| ||| Sbjct 48025 TTGACAACCTGGAACTCACCAGCAAGGACACGTCGCTGGTAGATGTTGGAGGTGTAGGGC 47966 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || ||||| || ||||| |||| || || | || ||| |||||||| || || | | Sbjct 47965 TCGAAGCATTCGTTGTTGCCCAGAATCTGAGAGGTACTGGCAGTGGGCATAGGAGCGACG 47906 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA- 116042 || | ||||||||||| ||| | || | || | |||||||||| |||||| || | Sbjct 47905 AGCAAGCTGTTGCGGACACCGTGCTCCTTGATCTGCTCCTTGAGGGAGTCCCACTCCCAC 47846 Query 116043 --GT-TGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGG 116099 || ||| | || | |||||||| || ||||||||||||| | || || || Sbjct 47845 AGGTCGGAG----GGCTTGACGTCCCACATGTCGTACTGGAGGATACCCTCAGATGCAGG 47790 Query 116100 CGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAG 116159 |||||||| || | ||||| |||||||| |||| || | || | || || || Sbjct 47789 CGATCCCTTGAACGATTCATAGGGGCCCTCGACCTTGGCAATCTCCATGGAAGCTTCAAG 47730 Query 116160 GGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATC 116219 ||| || || || || ||||| || || | |||| | |||||| || || Sbjct 47729 GGCGGCATGGTAAATGGTCTCGAAGATCTGCTTGTTCAGCTCGCGAGCCTCGGGAGACTC 47670 Query 116220 AAACGCGAGACGGCACA-AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTG 116278 ||| | |||| ||| | | || | || || ||||| |||||||||| || || | Sbjct 47669 AAAGGGCAGAC-GCAGAGCGAGGAACGCGTCAGCAAGACCCTGGACACCGACACCGATAG 47611 Query 116279 GGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAA 116338 | || || | ||| || || ||||| ||| ||||| || ||| |||||| | Sbjct 47610 GTCGGTGGCGCATGTTGCTGTTGCGAGCCTCCTCGACGGGGTAGTGGTTCACATCGATGA 47551 Query 116339 CCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAAC 116398 | || || || | ||| ||||| |||| ||| |||||||| | | | || | | Sbjct 47550 TGCGGTTGAGGTTGCGGACGACCACCTTGGTGACTTCGTGAAGCTTCTTGAAGTCGTAGC 47491 Query 116399 TGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGG 116458 || | | | |||| | |||||||| | || |||| || || |||| | Sbjct 47490 AGCCCTCGTTGTAGTCGACAAAGGCGGGAAGGGCCAGAGAGGCCAAGTTGCAGACAGCGA 47431 Query 116459 TCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGC 116518 ||| || || |||||| || || || || || | || || || ||||||| Sbjct 47430 CCTCGTCGGGGGCACAGTACTCAATGATCTCAGTGCAGAGGTTAGAGCTGCGGATGGTGC 47371 Query 116519 CCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCC 116578 |||||||||| || || ||| ||| || |||||||| ||||| | || | | Sbjct 47370 CCAAGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAAAGCATGAAGGGGTTAC 47311 Query 116579 CCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCACAG-TGGC 116636 | ||||| || |||| || || || | | ||| | || ||| |||| | ||| Sbjct 47310 CAGTCTCGGTCTGGGCCTCCAGGATGGAGTACCA-----CAGCTTCTGAGCACGGATGGT 47256 Query 116637 GTT---GGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCAC 116693 || | || |||||| |||||||||| ||| || ||||||||||| || || Sbjct 47255 CTTACGACCACGTCCCTCCCTCTCGTACTTTTCGTACAGAGCCTCAAACTCCTC-GCCGT 47197 Query 116694 AGC-CTCTGAGAGCCCTGGTGCCTT-ATCTGGACAGAAGAGAGACCATTGACCA--CCCT 116749 ||| || | || || || || || | || || | ||| | ||| | ||| || Sbjct 47196 AGCAGTCAGCAAGACCAGG-GCATTCGTTGGGGCACATGAGCGTCCA--GTCCAAGTTCT 47140 Query 116750 CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGC 116809 ||| || |||||||||||||| || |||||||| || || ||| | || || || Sbjct 47139 TCTCGACACGCTTCATGAAGAGATCGGGGATCCACAGAGCAAGGAACAAGTCGCGGGCGC 47080 Query 116810 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 116869 || | || || | || || || || | || | ||||| | || || ||||||| Sbjct 47079 GAACCTCCTCCTTGCCGTGGTTCTTGCGGAGATCAAGGAAGTCAAAGACGTCGGCGTGCC 47020 Query 116870 ACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACAT 116923 | || || ||||| | || | | || | |||| ||| |||||| || | Sbjct 47019 AGGGCTCGAGGTAGATGGCAAAGGCACCAGGACGCTTG---TTGCCACCCTGGTCGACGT 46963 Query 116924 ACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTG 116983 | | || || ||| || || || ||||| || || || || | || ||| || | Sbjct 46962 ATCGGGCAGTGTTGTTGAAGACTCGCAGCATGGGGATAATGCCGTTGGAGGTGCCGTTGG 46903 Query 116984 T-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCC 117041 | || ||| || ||| | |||| | || ||||| || || ||| || || || Sbjct 46902 TGCCGGCGATGTAGGAGCC--AGTGGCACGGATGCGGTGGACGTTCAGACCGATGCCACC 46845 Query 117042 TGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTC 117101 ||| ||| || || || ||| | | || || | ||||| || || || ||| Sbjct 46844 AGCCATCTTGGAAATCATGGCACACGTCTTCAGGGTGTCATAGATACCCTCAATGCTGTC 46785 Query 117102 ACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT-TGGTGTACCAGCGTTGA 117160 |||| | | | |||||||| |||| || ||| | || || ||||| |||| Sbjct 46784 GTCCTTCATGTCCACCAGGAAGCATGAGGACAGCTG-GGCTTGCGGGGTGCCAGCATTGA 46726 Query 117161 AGAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAA 117218 ||||||| || | |||||| ||| | | |||| |||||| | ||| ||||| | Sbjct 46725 AGAGGGTAGGGGAGGCGTGGGTGA--AGAACTTGCTGGACATGAGGTGGTATGTCTCGAG 46668 Query 117219 GACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 |||| |||||| || || || || | | || ||||||| ||||| ||| || Sbjct 46667 GACACGCTCAATGTCGTCTCCCCAGATGCCAACGGCCACTCGCATAATCATGTGTTGTGG 46608 Query 117279 TGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACC 117338 || | | | || |||||| || | ||||| ||||| ||||||| || Sbjct 46607 CCGCTCGACAATCTTGCCGTCGAGCTTCAGAAGGTATGATCGCTCCAGCGTCTTGAAGCC 46548 Query 117339 AAAATA 117344 ||| || Sbjct 46547 AAAGTA 46542 >seq804 Length=175399 Score = 123 bits (136), Expect = 3e-23 Identities = 345/521 (66%), Gaps = 9/521 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| |||||||||||||| |||||||| || || || ||| ||| || Sbjct 35148 GCAAAGTCCGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCG 35207 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||||||||| |||||||| | ||||||||| | ||| | || ||||||||| Sbjct 35208 GGCATGAGACCTCGCTTCTTGAGCCAGAAAATGGAGGCAAAGGCACCGCTGAAGAAGATA 35267 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAA 127698 ||||| ||| || || |||| ||||||| ||||||||| || | |||| | | Sbjct 35268 CCCTCGACAGCGGCAAAGGCAACGAGACGCTGGGCAAAGGA-CGAGTTCTTGTCCTGGAT 35326 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAA 127758 ||| |||||||| | ||||| || || || || | ||||| || || | || Sbjct 35327 CCATCGAATCGCCCAGTCAGCCTTCTTGCGAATGCAAGGAATGGTCTCAATGGCGTTGAA 35386 Query 127759 GAGTTCCTTCTTTTCTGATG-GATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTT 127817 ||| | || | | || | || ||||| || | || ||||| || || || | Sbjct 35387 GAGGTAGTTGCGCT-GGCTGTGCTCCTTGATATAAGTGTCGATGAGCAGGGAGTACGTCT 35445 Query 127818 CGCCGTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATC 127876 || ||||| | | ||| || | ||| | |||| || |||| || ||| ||| Sbjct 35446 CGGAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAAAAGCAGCGAGCCTCGGGGATC 35504 Query 127877 TGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCA 127936 || ||||| || || | | ||||| ||||| || || || | || Sbjct 35505 TGGACCTCGCCGCTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCCGAGGCGGCG 35564 Query 127937 AAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAG 127993 || || |||||||| | ||||| | || || | ||||||| || | |||||| Sbjct 35565 AAGAAGGCCAGGATGTGAGAGATGAAGTACTTCTCGTCATCGTTCAGGCGGTTGTTCCAG 35624 Query 127994 TCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| || ||||| || || || | |||||| || ||||| Sbjct 35625 TCGTGCAGGTCCTTGGACAGGTCAATCTCCTCGGCGGTCCA 35665 >seq710 Length=40501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/268 (69%), Gaps = 8/268 (3%) Strand=Plus/Plus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 ||||| |||||| |||||||||||||| | ||| || || ||| | ||| | | | Sbjct 23830 ACCGATGGCGTCGATTTCGTCAATGAAGATGATGCAGGGCGCATTCTTTCGGCCTTCCGC 23889 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 || | |||||||| | | || || || ||||||||||||||||| | | | Sbjct 23890 GAACAAGTCTCGCACACGAGAAGGGCCCACGCCAACAAACATCTCCACAAACTCAGAACC 23949 Query 12995 G-GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 | || | || |||||| ||| || || || || |||| |||||| || |||| Sbjct 23950 GCTCACGCT-GAAGAAGGGCACGCCAGACTCTCCGGCAGTGGCCTTGGCGAGAAGCGTCT 24008 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC--ACTTC- 13110 | || || ||||| || ||||||| |||||| || |||||| ||||||| |||| Sbjct 24009 TTCCTGTTCCTGGAGGGCCGGCGAGAATGGCACCGCGAGGGATCTTGGCACCCAGCTTCT 24068 Query 13111 CAAAGTAGCGCTCGGGTTGTTTAAGAAA 13138 |||| | ||||||||| || || || Sbjct 24069 CAAACT---TCTCGGGTTGCTTCAGGAA 24093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500413076600